#================================================================================================== # The list of 73 multiple families and 69 singleton families from # 341 representative DNA-binding domains (which have structural neighbours at Rmsd < 3.5; Z-score (CE) > 4.1; # the length of alignment > 70% of the domain length) classified at the following threshold parameters: # Rmsd < 3.5; Z-score (CE) > 4.1; # the length of alignment, Rnar > 70% of the domain length # the quantity of residues interacting with DNA and matched in the structural alignment (percents to all contacting residues), # Rmat > 70% #================================================================================================== 1 ( 2) 1G9Y:B:1 202- 353 DNA ENDONUCLEASE I-CREI scop: d.95.2.1 CATH: 3.10.28.10 202- 353 Dali: 1MOW:G:2 1114-1250 CHIMERA OF HOMING ENDONUCLEASE I-DMOI AND DNA ENDO scop: CATH: Dali: 2 ( 2) 1KC6:C:1 2- 241 TYPE II RESTRICTION ENZYME HINCII scop: c.52.1.19 CATH: Dali: 1KC6:A:1 2- 56 112- 241 TYPE II RESTRICTION ENZYME HINCII scop: c.52.1.19 CATH: Dali: 3 ( 2) 1KBU:B:1 132- 326 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: Dali: 3CRX:B:1 132- 295 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: 1.10.443.10 132- 331 Dali: DC_6_176_1_1 130- 315 4 ( 2) 1EON:B:1 2- 245 TYPE II RESTRICTION ENZYME ECORV scop: c.52.1.2 CATH: 3.40.600.10 2- 245 Dali: DC_1_81_1_2 2- 18 36- 139 DC_6_215_1_1 19- 35 140- 164 1EOO:A:1 2- 217 TYPE II RESTRICTION ENZYME ECORV scop: c.52.1.2 CATH: 3.40.600.10 2- 245 Dali: DC_1_81_1_2 2- 18 36- 139 DC_6_215_1_1 19- 35 140- 164 5 ( 2) 1EJ9:A:1 203- 234 308- 439 DNA TOPOISOMERASE I scop: e.15.1.1 203- 430 CATH: 2.170.11.10 320- 430 Dali: DC_3_227_5_1 230- 318 358- 374 DC_7_144_2_1 215- 229 339- 357 1A35:A:1 215- 226 334- 436 TOPOISOMERASE I scop: e.15.1.1 215- 430 CATH: 2.170.11.10 320- 430 Dali: DC_3_227_5_1 230- 318 358- 374 DC_7_144_2_1 215- 229 339- 357 6 ( 6) 1J5N:A:1 15- 93 NONHISTONE CHROMOSOMAL PROTEIN 6A scop: CATH: Dali: 1J46:A:1 1- 74 SEX-DETERMINING REGION Y PROTEIN scop: a.21.1.1 CATH: 1.10.30.10 1- 85 Dali: 1QRV:A:1 2- 74 HIGH MOBILITY GROUP PROTEIN D scop: a.21.1.1 CATH: 1.10.30.10 2- 74 Dali: DC_3_191_1_3 3- 74 1HRY:A:1 3- 75 HUMAN SRY scop: a.21.1.1 CATH: 1.10.30.10 3- 75 Dali: DC_6_164_1_4 3- 75 1CKT:A:1 7- 77 HIGH MOBILITY GROUP 1 PROTEIN scop: a.21.1.1 CATH: 1.10.30.10 7- 77 Dali: DC_6_164_1_1 7- 77 1GT0:D:1 1- 67 TRANSCRIPTION FACTOR SOX-2 scop: CATH: Dali: 7 ( 2) 4CRX:B:1 20- 131 CRE RECOMBINASE scop: a.60.9.1 20- 129 CATH: 1.10.150.130 20- 130 Dali: DC_6_139_2_1 64- 129 1KBU:B:2 44- 131 CRE RECOMBINASE scop: a.60.9.1 19- 129 CATH: Dali: 8 ( 2) 1XBR:B:1 39- 221 T PROTEIN scop: b.2.5.1 CATH: 2.60.40.820 39- 221 Dali: DC_2_27_30_4 39- 194 1H6F:B:1 100- 285 T-BOX TRANSCRIPTION FACTOR TBX3; SYNONYM: TBX3 TRA scop: b.2.5.1 CATH: Dali: 9 ( 2) 1NG9:A:1 1- 114 DNA MISMATCH REPAIR PROTEIN MUTS scop: CATH: Dali: 1EWQ:A:1 2- 116 DNA MISMATCH REPAIR PROTEIN MUTS scop: d.75.2.1 1- 120 CATH: Dali: 10 (13) 1A6Y:B:1 96- 178 REVERBA ORPHAN NUCLEAR RECEPTOR scop: g.39.1.2 CATH: 3.30.50.10 96- 178 Dali: DC_7_162_1_1 99- 171 1GLU:B:1 434- 514 GLUCOCORTICOID RECEPTOR (DNA-BINDING DOMAIN) COMPL scop: g.39.1.2 CATH: 3.30.50.10 434- 514 Dali: DC_7_162_1_1 438- 508 1GLU:A:1 434- 514 GLUCOCORTICOID RECEPTOR (DNA-BINDING DOMAIN) COMPL scop: g.39.1.2 CATH: 3.30.50.10 434- 514 Dali: DC_7_162_1_1 438- 508 1LAT:B:1 437- 510 GLUCOCORTICOID RECEPTOR scop: g.39.1.2 CATH: 3.30.50.10 437- 510 Dali: DC_7_162_1_1 438- 508 2NLL:A:1 135- 200 RETINOIC ACID RECEPTOR scop: g.39.1.2 CATH: 3.30.50.10 135- 200 Dali: DC_7_162_1_1 135- 200 2NLL:B:1 300- 384 THYROID HORMONE RECEPTOR scop: g.39.1.2 CATH: 3.30.50.10 300- 402 Dali: DC_7_162_1_1 300- 402 1HCQ:B:1 4- 74 HUMAN/CHICKEN ESTROGEN RECEPTOR scop: g.39.1.2 CATH: 3.30.50.10 4- 74 Dali: DC_7_162_1_1 5- 74 1CIT:A:1 230- 302 ORPHAN NUCLEAR RECEPTOR NGFI-B scop: g.39.1.2 CATH: 3.30.50.10 230- 318 Dali: DC_7_162_1_1 231- 318 1BY4:A:1 1131-1209 RETINOIC ACID RECEPTOR RXR-ALPHA scop: g.39.1.2 CATH: 3.30.50.10 1131-1209 Dali: DC_7_162_1_1 1132-1209 1DSZ:A:1 1134-1208 RETINOIC ACID RECEPTOR ALPHA scop: g.39.1.2 CATH: 3.30.50.10 1134-1208 Dali: DC_7_162_1_1 1134-1208 1DSZ:B:1 1228-1311 RETINOIC ACID RECEPTOR RXR-ALPHA scop: g.39.1.2 CATH: 3.30.50.10 1228-1311 Dali: DC_7_162_1_1 1232-1311 1KB6:A:1 21- 103 VITAMIN D3 RECEPTOR scop: g.39.1.2 CATH: Dali: 1KB2:A:1 22- 94 VITAMIN D3 RECEPTOR scop: g.39.1.2 CATH: Dali: 11 ( 2) 1JB7:A:1 36- 199 TELOMERE-BINDING PROTEIN ALPHA SUBUNIT scop: b.40.4.3 36- 204 CATH: 2.40.50.10 37- 210 Dali: 1KIX:A:1 36- 209 299- 317 TELOMERE-BINDING PROTEIN ALPHA SUBUNIT scop: b.40.4.3 36- 204 CATH: Dali: 12 ( 6) 1BC8:C:1 1- 93 SAP-1 scop: a.4.5.21 CATH: 1.10.10.10 1- 93 Dali: DC_6_157_1_2 5- 86 1PUE:E:1 171- 258 TRANSCRIPTION FACTOR PU.1 scop: a.4.5.21 CATH: 1.10.10.10 171- 258 Dali: DC_6_157_1_2 172- 256 1K79:A:1 333- 436 C-ETS-1 PROTEIN scop: a.4.5.21 CATH: Dali: 1DUX:C:1 5- 90 ETS-DOMAIN PROTEIN ELK-1 scop: a.4.5.21 CATH: 1.10.10.10 5- 90 Dali: DC_6_157_1_2 5- 87 1MDM:B:1 309- 437 C-ETS-1 PROTEIN scop: CATH: Dali: 2STT:A:1 40- 105 ETS1 scop: a.4.5.21 CATH: 1.10.10.10 10- 105 Dali: DC_6_157_1_2 25- 105 13 ( 2) 1UAA:A:4 274- 376 539- 640 ATP-DEPENDENT DNA HELICASE REP scop: c.37.1.13 2- 307 c.37.1.13 308- 640 CATH: 3.40.50.300 274- 376 542- 639 Dali: DC_1_17_1_3 310- 373 549- 574 DC_3_98_1_1 242- 251 274- 309 3PJR:A:4 283- 382 543- 652 HELICASE PCRA scop: c.37.1.13 4- 318 c.37.1.13 319- 652 CATH: Dali: DC_1_17_1_3 319- 381 556- 581 DC_3_98_1_1 251- 260 283- 318 14 ( 9) 1A66:A:1 1- 178 CORE NFATC1 scop: b.2.5.1 CATH: 2.60.40.340 1- 178 Dali: DC_2_27_30_2 8- 174 1A3Q:A:1 37- 140 187- 227 NUCLEAR FACTOR-KAPPA-B P52 scop: b.2.5.1 37- 226 CATH: 2.60.40.340 38- 141 186- 222 Dali: DC_2_27_30_1 37- 141 186- 215 1A02:N:1 399- 574 NFAT scop: b.2.5.1 399- 576 CATH: 2.60.40.340 399- 569 Dali: DC_2_27_30_2 399- 569 2RAM:A:1 19- 193 TRANSCRIPTION FACTOR NF-KB P65 scop: b.2.5.1 19- 191 CATH: 2.60.40.340 19- 188 Dali: DC_2_27_30_1 19- 121 153- 181 DC_6_154_1_1 122- 152 1VKX:B:1 339- 447 505- 545 NF-KAPPA-B P50 scop: b.2.5.1 339- 546 CATH: 2.60.40.340 340- 442 506- 542 Dali: DC_2_27_30_1 339- 442 506- 535 1GJI:B:1 7- 179 C-REL PROTO-ONCOGENE PROTEIN scop: b.2.5.1 7- 181 CATH: Dali: 1BVO:A:1 48- 222 TRANSCRIPTION FACTOR GAMBIF1 scop: b.2.5.1 CATH: 2.60.40.340 48- 222 Dali: DC_2_27_30_1 48- 152 186- 216 DC_6_154_1_1 153- 185 1NFK:A:1 39- 245 NUCLEAR FACTOR KAPPA-B scop: b.2.5.1 39- 250 CATH: 1.10.15.20 143- 205 2.60.40.340 40- 142 206- 242 Dali: DC_2_27_30_1 39- 142 206- 235 DC_6_154_1_1 143- 205 1IMH:C:1 188- 365 NUCLEAR FACTOR OF ACTIVATED T CELLS 5 scop: b.2.5.1 188- 367 CATH: Dali: 15 ( 8) 1NGM:M:1 61- 71 158- 240 TRANSCRIPTION INITIATION FACTOR TFIID scop: CATH: Dali: 1NGM:A:2 72- 157 TRANSCRIPTION INITIATION FACTOR TFIID scop: CATH: Dali: 1QNA:B:2 28- 116 TRANSCRIPTION INITIATION FACTOR TFIID-1 scop: d.129.1.1 12- 115 CATH: 3.30.310.10 30- 115 Dali: DC_5_6_1_1 30- 116 1QNC:A:1 16- 27 117- 198 TRANSCRIPTION INITIATION FACTOR TFIID-1 scop: d.129.1.1 16- 115 d.129.1.1 116- 198 CATH: 3.30.310.10 19- 29 116- 197 Dali: DC_5_6_1_2 19- 29 117- 198 1JFI:C:2 368- 456 TATA-BOX-BINDING PROTEIN (TBP) scop: d.129.1.1 356- 456 CATH: Dali: 1D3U:A:2 14- 104 TATA-BINDING PROTEIN scop: d.129.1.1 1- 92 CATH: 3.30.310.10 16- 102 Dali: DC_5_6_1_1 16- 103 1TGH:A:1 155- 165 251- 334 HUMAN TATA BINDING PROTEIN scop: d.129.1.1 155- 252 d.129.1.1 253- 334 CATH: 3.30.310.10 155- 165 252- 334 Dali: DC_5_6_1_2 155- 165 253- 334 1AIS:A:1 1- 13 104- 181 TATA-BINDING PROTEIN scop: d.129.1.1 1- 92 d.129.1.1 93- 181 CATH: 3.30.310.10 5- 15 103- 181 Dali: DC_5_6_1_2 5- 15 104- 181 16 ( 3) 1K82:D:2 127- 206 233- 268 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE scop: e.14.1.1 CATH: Dali: 1L2C:A:1 2- 13 133- 274 MUTM scop: e.14.1.1 CATH: Dali: 1NNJ:A:1 1- 12 127- 271 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE scop: CATH: Dali: 17 ( 8) 1PDN:C:1 2- 68 PRD PAIRED DOMAIN scop: a.4.1.5 CATH: 1.10.10.10 2- 69 Dali: DC_3_155_1_9 17- 70 1K78:A:1 19- 83 PAIRED BOX PROTEIN PAX5 scop: a.4.1.5 19- 81 CATH: Dali: 1TC3:C:1 202- 252 TC3 TRANSPOSASE scop: a.4.1.2 CATH: 1.10.10.60 202- 252 Dali: DC_3_155_1_8 202- 252 6PAX:A:2 17- 68 HOMEOBOX PROTEIN PAX-6 scop: a.4.1.5 1- 68 CATH: 1.10.10.10 2- 69 Dali: DC_3_155_1_9 17- 70 1GDT:A:2 146- 183 GAMMA-DELTA RESOLVASE scop: a.4.1.2 141- 183 CATH: 1.10.10.60 141- 183 Dali: 1GDT:B:2 146- 183 GAMMA-DELTA RESOLVASE scop: a.4.1.2 141- 183 CATH: 1.10.10.60 139- 183 Dali: 1HCR:A:1 139- 180 HIN RECOMBINASE (DNA-BINDING DOMAIN) COMPLEXED WIT scop: a.4.1.2 CATH: 1.10.10.60 139- 190 Dali: DC_3_155_1_12 139- 190 1JKP:C:1 139- 185 DNA-INVERTASE HIN scop: a.4.1.2 CATH: Dali: 18 ( 2) 1IHF:A:1 33- 97 INTEGRATION HOST FACTOR scop: a.55.1.1 CATH: 4.10.520.10 2- 97 Dali: DC_6_170_3_1 3- 92 1IHF:B:1 33- 94 INTEGRATION HOST FACTOR scop: a.55.1.1 CATH: 4.10.520.10 1- 94 Dali: DC_6_170_3_1 1- 91 19 ( 5) 1LV5:B:2 484- 514 576- 640 DNA POLYMERASE I scop: CATH: Dali: 1L3U:A:2 484- 507 581- 640 DNA POLYMERASE I scop: CATH: Dali: 1T7P:A:4 219- 246 395- 455 DNA POLYMERASE scop: e.8.1.1 211- 704 CATH: 3.30.70.370 415- 477 590- 704 Dali: DC_6_23_19_3 223- 235 409- 503 4KTQ:A:2 443- 463 541- 597 LARGE FRAGMENT OF DNA POLYMERASE I scop: e.8.1.1 423- 832 CATH: 1.20.1060.10 447- 563 3.30.70.370 564- 613 758- 831 Dali: DC_6_42_3_1 433- 451 549- 602 1KLN:A:2 539- 559 636- 693 DNA POLYMERASE I (KLENOW FRAGMENT) (E.C.2.7.7.7) M scop: e.8.1.1 519- 928 CATH: Dali: DC_6_42_3_1 529- 547 644- 697 20 (20) 1LFU:P:1 0- 78 HOMEOBOX PROTEIN PBX1 scop: CATH: Dali: 1LE8:A:1 74- 126 MATING-TYPE PROTEIN A-1 scop: a.4.1.1 CATH: Dali: 1NK3:P:1 100- 162 HOMEOBOX PROTEIN VND scop: a.4.1.1 CATH: 1.10.10.60 100- 162 Dali: DC_3_155_1_2 105- 159 1NK2:P:1 114- 164 HOMEOBOX PROTEIN VND scop: a.4.1.1 CATH: 1.10.10.60 101- 177 Dali: DC_3_155_1_5 111- 175 1MNM:C:1 135- 189 MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR scop: a.4.1.1 CATH: 1.10.10.60 113- 189 Dali: DC_3_155_1_5 128- 189 1MNM:D:1 126- 189 MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR scop: a.4.1.1 CATH: 1.10.10.60 113- 189 Dali: DC_3_155_1_5 134- 189 1B8I:B:1 205- 262 HOMEOBOX PROTEIN EXTRADENTICLE scop: a.4.1.1 CATH: 1.10.10.60 205- 262 Dali: DC_3_155_1_3 208- 256 1B72:A:1 208- 264 HOMEOBOX PROTEIN HOX-B1 scop: a.4.1.1 CATH: 1.10.10.60 177- 264 Dali: DC_3_155_1_2 207- 261 1B72:B:1 235- 307 PBX1 scop: a.4.1.1 CATH: 1.10.10.60 235- 307 Dali: DC_3_155_1_3 240- 291 1B8I:A:1 111- 160 ULTRABITHORAX HOMEOTIC PROTEIN IV scop: a.4.1.1 CATH: 1.10.10.60 88- 160 Dali: DC_3_155_1_2 105- 159 1APL:C:1 131- 189 MAT ALPHA2 HOMEODOMAIN COMPLEXED WITH OPERATOR DNA scop: a.4.1.1 CATH: 1.10.10.60 131- 189 Dali: DC_3_155_1_5 131- 189 1AHD:P:1 0- 56 ANTENNAPEDIA PROTEIN (HOMEODOMAIN) MUTANT WITH CYS scop: a.4.1.1 CATH: 1.10.10.60 0- 67 Dali: DC_3_155_1_2 5- 59 1AU7:B:2 106- 160 PIT-1 scop: a.4.1.1 103- 160 CATH: 1.10.10.60 104- 159 Dali: DC_3_155_1_1 103- 160 1HF0:B:2 106- 159 OCTAMER-BINDING TRANSCRIPTION FACTOR 1 scop: a.4.1.1 102- 159 CATH: Dali: 1HDD:C:1 3- 59 ENGRAILED HOMEODOMAIN COMPLEX WITH /DNA$ scop: a.4.1.1 CATH: 1.10.10.60 3- 59 Dali: DC_3_155_1_2 5- 59 1CQT:A:2 103- 161 POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 scop: a.4.1.1 102- 161 CATH: Dali: DC_3_155_1_1 117- 161 1FJL:B:1 1- 58 PAIRED PROTEIN scop: a.4.1.1 CATH: 1.10.10.60 1- 58 Dali: DC_3_155_1_2 5- 57 1JGG:B:1 303- 359 SEGMENTATION PROTEIN EVEN-SKIPPED scop: a.4.1.1 CATH: 1.10.10.60 303- 359 Dali: 1IG7:A:1 102- 159 HOMEOTIC PROTEIN MSX-1 scop: a.4.1.1 CATH: 1.10.10.60 102- 159 Dali: 1E3O:C:2 104- 149 OCTAMER-BINDING TRANSCRIPTION FACTOR 1 scop: a.4.1.1 104- 160 CATH: Dali: 21 ( 3) 1GM5:A:4 153- 252 RECG scop: b.40.4.9 106- 285 CATH: Dali: 1JMC:A:1 183- 299 REPLICATION PROTEIN A scop: b.40.4.3 183- 298 CATH: 2.40.50.10 183- 296 Dali: DC_4_10_5_1 183- 296 1JMC:A:2 300- 420 REPLICATION PROTEIN A scop: b.40.4.3 299- 420 CATH: 2.40.50.10 297- 420 Dali: DC_4_10_1_7 297- 403 22 ( 2) 1JE8:E:1 150- 216 NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL scop: CATH: Dali: 1L3L:B:2 172- 234 TRANSCRIPTIONAL ACTIVATOR PROTEIN TRAR scop: a.4.6.2 172- 234 CATH: Dali: 23 ( 3) 1K4T:A:5 594- 654 697- 765 DNA TOPOISOMERASE I scop: CATH: Dali: 1A35:A:3 594- 765 TOPOISOMERASE I scop: d.163.1.2 431- 635 713- 765 CATH: 1.10.132.10 591- 635 713- 764 Dali: DC_3_140_2_1 587- 633 635- 724 DC_7_144_1_1 725- 765 1A36:A:5 594- 633 713- 765 TOPOISOMERASE I scop: d.163.1.2 431- 633 713- 765 CATH: 1.10.132.10 591- 633 713- 765 Dali: DC_3_140_2_1 587- 633 710- 724 DC_7_144_1_1 725- 765 24 ( 7) 1C0W:C:1 2- 72 DIPHTHERIA TOXIN REPRESSOR scop: a.4.5.24 2- 64 CATH: Dali: DC_3_153_1_4 5- 76 1CF7:A:1 16- 82 TRANSCRIPTION FACTOR E2F-4 scop: a.4.5.17 CATH: 1.10.10.10 16- 82 Dali: DC_3_153_1_8 16- 82 1H9T:B:1 5- 79 FATTY ACID METABOLISM REGULATOR PROTEIN scop: a.4.5.6 5- 78 CATH: Dali: 1H9T:A:1 5- 79 227- 239 FATTY ACID METABOLISM REGULATOR PROTEIN scop: a.4.5.6 5- 78 CATH: Dali: 1LB2:A:2 131- 209 CATABOLITE GENE ACTIVATOR PROTEIN scop: CATH: Dali: 1QBJ:A:1 134- 198 DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE ( scop: a.4.5.19 CATH: 1.10.10.10 134- 198 Dali: DC_3_153_1_2 134- 198 1J75:A:1 113- 169 TUMOR STROMA AND ACTIVATED MACROPHAGE PROTEIN DLM- scop: a.4.5.19 CATH: Dali: 25 ( 2) 1NOP:A:2 353- 608 TYROSYL-DNA PHOSPHODIESTERASE 1 scop: CATH: Dali: 1NOP:B:1 159- 188 278- 301 353- 607 TYROSYL-DNA PHOSPHODIESTERASE 1 scop: CATH: Dali: 26 ( 6) 1MSE:C:2 135- 193 C-MYB DNA-BINDING DOMAIN COMPLEXED WITH DNA (NMR, scop: a.4.1.3 144- 193 CATH: 1.10.10.60 145- 193 Dali: DC_3_155_1_13 145- 192 1MSE:C:1 89- 134 C-MYB DNA-BINDING DOMAIN COMPLEXED WITH DNA (NMR, scop: a.4.1.3 89- 143 CATH: 1.10.10.60 89- 144 Dali: 1H8A:C:1 87- 140 MYB TRANSFORMING PROTEIN scop: a.4.1.3 87- 143 CATH: Dali: 1H88:C:1 39- 88 MYB PROTO-ONCOGENE PROTEIN scop: a.4.1.3 39- 88 CATH: Dali: 1H89:C:1 141- 191 MYB PROTO-ONCOGENE PROTEIN scop: a.4.1.3 144- 191 CATH: Dali: 1IV6:A:1 378- 434 TELOMERIC REPEAT BINDING FACTOR 1 scop: a.4.1.4 CATH: Dali: 27 ( 5) 1AU7:A:1 5- 105 PIT-1 scop: a.35.1.1 5- 76 CATH: 1.10.260.10 5- 76 Dali: DC_3_214_1_4 5- 76 1E3O:C:1 1- 75 150- 160 OCTAMER-BINDING TRANSCRIPTION FACTOR 1 scop: a.35.1.1 1- 75 CATH: Dali: 1GT0:C:1 3- 102 OCTAMER-BINDING TRANSCRIPTION FACTOR 1; SYNONYM: O scop: CATH: Dali: 1CQT:B:1 505- 602 POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 scop: a.35.1.1 505- 575 CATH: Dali: DC_3_214_1_4 505- 574 1CQT:A:1 2- 102 POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 scop: a.35.1.1 2- 75 CATH: Dali: DC_3_214_1_4 5- 74 28 ( 3) 1BF4:A:1 2- 64 SSO7D scop: d.9.2.1 CATH: 2.40.50.40 2- 64 Dali: DC_4_19_2_1 2- 64 1BBX:C:1 1- 63 DNA-BINDING PROTEIN 7 scop: d.9.2.1 CATH: 2.40.50.40 1- 63 Dali: DC_4_19_2_1 2- 61 1CA5:A:1 2- 66 CHROMOSOMAL PROTEIN SAC7D scop: d.9.2.1 CATH: 2.40.50.40 2- 66 Dali: DC_4_19_2_1 2- 66 29 ( 3) 1D3U:B:2 1208-1300 TRANSCRIPTION INITIATION FACTOR IIB scop: a.74.1.2 1206-1300 CATH: 1.10.472.10 1207-1300 Dali: DC_3_134_1_6 1207-1300 1C9B:I:2 210- 316 GENERAL TRANSCRIPTION FACTOR IIB scop: a.74.1.2 208- 316 CATH: 1.10.472.10 210- 315 Dali: DC_3_134_1_11 207- 279 1VOL:A:1 113- 209 TRANSCRIPTION FACTOR IIB scop: a.74.1.2 113- 207 CATH: 1.10.472.10 113- 209 Dali: DC_3_134_1_7 113- 205 30 ( 2) 2UP1:A:1 8- 89 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 scop: d.58.7.1 8- 98 CATH: 3.30.70.330 9- 95 Dali: DC_5_3_26_2 9- 93 2UP1:A:2 104- 180 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 scop: d.58.7.1 99- 190 CATH: 3.30.70.330 100- 180 Dali: DC_5_3_26_1 101- 181 31 ( 4) 1K82:D:1 1- 126 207- 232 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE scop: e.14.1.1 CATH: Dali: 1K3W:A:1 1- 123 ENDONUCLEASE VIII scop: CATH: Dali: 1KFV:A:1 1- 126 FORMAMIDO-PYRIMIDINE DNA GLYCOSYLASE scop: e.14.1.1 CATH: Dali: 1L2D:A:2 14- 132 MUTM scop: e.14.1.1 CATH: Dali: 32 ( 2) 2PJR:F:1 704- 816 884-1021 HELICASE PCRA scop: c.37.1.13 704-1018 CATH: 3.40.50.300 711- 815 894- 982 3.90.500.16 983-1085 1246-1247 Dali: DC_1_15_1_13 723- 813 896- 950 DC_3_98_1_1 951- 960 983-1018 2PJR:A:1 7- 99 213- 321 HELICASE PCRA scop: c.37.1.13 7- 318 CATH: 3.40.50.300 11- 115 194- 282 3.90.500.16 283- 385 546- 548 Dali: DC_1_15_1_13 23- 113 196- 250 DC_3_98_1_1 251- 260 283- 318 33 ( 2) 1K78:I:1 84- 141 PAIRED BOX PROTEIN PAX5 scop: a.4.1.5 84- 141 CATH: Dali: 6PAX:A:1 69- 133 HOMEOBOX PROTEIN PAX-6 scop: a.4.1.5 69- 133 CATH: 1.10.10.10 70- 118 Dali: DC_3_155_1_10 71- 133 34 ( 3) 1J5K:A:1 10- 85 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K scop: d.51.1.1 CATH: Dali: 1J4W:A:1 1- 74 FUSE BINDING PROTEIN scop: d.51.1.1 1- 74 CATH: Dali: 1J4W:A:2 104- 174 FUSE BINDING PROTEIN scop: d.51.1.1 104- 174 CATH: Dali: 35 ( 3) 1EFA:A:1 2- 50 LAC REPRESSOR scop: a.35.1.5 2- 60 CATH: 1.10.260.10 2- 60 Dali: DC_3_214_1_7 4- 49 1QP0:A:1 3- 52 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR scop: a.35.1.5 3- 58 CATH: 1.10.260.10 3- 59 Dali: 1LBG:D:1 2- 47 LACTOSE OPERON REPRESSOR scop: a.35.1.5 1- 60 CATH: Dali: 36 ( 4) 2KTQ:A:6 464- 540 LARGE FRAGMENT OF DNA POLYMERASE I scop: e.8.1.1 423- 832 CATH: 1.20.1060.10 447- 563 Dali: DC_3_41_1_1 452- 548 1LV5:B:6 515- 575 DNA POLYMERASE I scop: CATH: Dali: 1L3T:A:6 508- 580 DNA POLYMERASE I scop: CATH: Dali: 1T7P:A:3 247- 262 333- 394 DNA POLYMERASE scop: e.8.1.1 211- 704 CATH: 1.20.1060.10 233- 414 Dali: DC_3_41_1_2 236- 265 331- 408 37 ( 2) 2HMI:A:3 237- 318 HIV-1 REVERSE TRANSCRIPTASE scop: e.8.1.2 1- 429 CATH: 3.90.840.10 226- 319 Dali: DC_3_219_1_1 90- 101 222- 318 1N5Y:A:3 243- 315 REVERSE TRANSCRIPTASE scop: CATH: Dali: 38 ( 3) 3CRO:L:1 0- 64 434 CRO PROTEIN COMPLEX WITH 20 BASE PAIR PIECE OF scop: a.35.1.2 CATH: 1.10.260.10 1- 64 Dali: DC_3_214_1_2 1- 63 1PER:L:1 1- 63 PHAGE 434 REPRESSOR (AMINO-TERMINAL DOMAIN, RESIDU scop: a.35.1.2 CATH: 1.10.260.10 1- 63 Dali: DC_3_214_1_2 1- 63 1IC8:B:2 100- 174 HEPATOCYTE NUCLEAR FACTOR 1-ALPHA scop: CATH: Dali: 39 ( 3) 1BL0:A:2 61- 124 MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN scop: a.4.1.8 63- 124 CATH: 1.10.10.60 65- 124 Dali: 1D5Y:C:2 55- 124 ROB TRANSCRIPTION FACTOR scop: a.4.1.8 57- 121 CATH: 1.10.10.60 56- 121 Dali: 1D5Y:B:2 55- 104 ROB TRANSCRIPTION FACTOR scop: a.4.1.8 57- 121 CATH: 1.10.10.60 56- 121 Dali: 40 ( 3) 3GAT:A:1 1- 51 GATA-1 scop: g.39.1.1 CATH: 3.30.50.10 1- 66 Dali: DC_6_172_1_1 1- 60 7GAT:A:1 12- 56 AREA scop: g.39.1.1 CATH: 3.30.50.10 1- 66 Dali: DC_6_172_1_1 6- 64 6GAT:A:1 1- 56 AREA scop: g.39.1.1 CATH: 3.30.50.10 1- 66 Dali: DC_6_172_1_1 8- 65 41 ( 2) 1JT0:A:1 2- 53 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'R scop: a.4.1.9 2- 72 CATH: Dali: 1QPI:A:1 4- 55 TETRACYCLINE REPRESSOR scop: a.4.1.9 4- 67 CATH: 1.10.10.60 4- 66 Dali: DC_6_158_1_1 4- 63 42 ( 2) 1JJ4:B:1 285- 364 REGULATORY PROTEIN E2 scop: d.58.8.1 CATH: 3.30.70.330 285- 364 Dali: 2BOP:A:1 326- 410 BOVINE PAPILLOMAVIRUS-1 E2 (DNA-BINDING DOMAIN) (R scop: d.58.8.1 CATH: 3.30.70.330 326- 410 Dali: DC_5_3_15_2 326- 410 43 ( 2) 1FW6:B:5 1412-1493 DNA MISMATCH REPAIR PROTEIN MUTS scop: a.113.1.1 1267-1541 CATH: Dali: 1NG9:B:2 437- 517 DNA MISMATCH REPAIR PROTEIN MUTS scop: CATH: Dali: 44 ( 3) 1QP9:A:1 55- 106 CYP1(HAP1-PC7) ACTIVATORY PROTEIN scop: g.38.1.1 55- 97 CATH: 4.10.240.10 55- 130 Dali: DC_6_193_1_4 59- 128 1QP9:D:1 55- 105 CYP1(HAP1-PC7) ACTIVATORY PROTEIN scop: g.38.1.1 55- 97 CATH: 4.10.240.10 55- 129 Dali: DC_6_193_1_4 61- 129 2HAP:D:1 56- 95 HEME ACTIVATOR PROTEIN scop: g.38.1.1 56- 97 CATH: 4.10.240.10 56- 130 Dali: DC_6_193_1_4 62- 130 45 ( 4) 1ID3:G:1 13- 60 HISTONE H2A.1 scop: a.22.1.1 CATH: Dali: 1KX5:C:2 12- 60 HISTONE H2A.1 scop: CATH: Dali: 1M18:C:1 814- 857 HISTONE H2A.1 scop: CATH: Dali: 1F66:G:1 1016-1059 HISTONE H2A.Z scop: a.22.1.1 CATH: 1.10.20.10 1016-1122 Dali: 46 ( 2) 1BL0:A:1 9- 60 MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN scop: a.4.1.8 9- 62 CATH: 1.10.10.60 9- 64 Dali: 1D5Y:C:1 3- 54 ROB TRANSCRIPTION FACTOR scop: a.4.1.8 3- 56 CATH: 1.10.10.60 3- 55 Dali: 47 ( 5) 4BDP:A:4 655- 749 DNA POLYMERASE I scop: e.8.1.1 469- 876 CATH: 1.10.473.10 657- 800 Dali: DC_3_155_6_2 680- 752 1T7P:A:6 480- 565 DNA POLYMERASE scop: e.8.1.1 211- 704 CATH: 1.10.473.10 478- 589 Dali: DC_3_155_6_3 504- 560 DC_6_23_19_3 223- 235 409- 503 4KTQ:A:4 615- 706 LARGE FRAGMENT OF DNA POLYMERASE I scop: e.8.1.1 423- 832 CATH: 1.10.473.10 614- 757 Dali: DC_3_155_6_1 637- 696 1LV5:B:4 655- 750 DNA POLYMERASE I scop: CATH: Dali: 1QTM:A:4 612- 706 DNA POLYMERASE I scop: e.8.1.1 423- 831 CATH: 1.10.473.10 614- 757 Dali: DC_3_155_6_1 637- 696 48 ( 2) 1EGW:A:1 21- 72 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPT scop: d.88.1.1 CATH: Dali: DC_3_15_2_1 3- 67 1C7U:A:1 20- 64 MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM scop: d.88.1.1 CATH: Dali: DC_3_15_2_1 2- 68 49 ( 5) 1KX5:B:2 16- 61 HISTONE H4 scop: CATH: Dali: 1KX4:F:1 25- 61 HISTONE H4 scop: CATH: Dali: 1AOI:B:1 20- 59 HISTONE H4 scop: a.22.1.1 CATH: 1.10.20.10 20- 102 Dali: DC_3_123_1_4 20- 102 1M18:F:1 220- 261 HISTONE H4 scop: CATH: Dali: 1ID3:B:1 24- 59 HISTONE H4 scop: a.22.1.1 CATH: Dali: 50 ( 2) 1MJE:A:5 2971-3110 BREAST CANCER 2 scop: CATH: Dali: 1MJE:A:4 2720-2749 2888-2970 BREAST CANCER 2 scop: CATH: Dali: 51 ( 4) 1BDT:D:1 1- 40 ARC scop: a.43.1.1 CATH: 1.10.1220.10 1- 50 Dali: DC_3_209_1_2 5- 50 1BDT:C:1 1- 40 ARC scop: a.43.1.1 CATH: 1.10.1220.10 1- 50 Dali: DC_3_209_1_2 5- 50 1PAR:A:1 1- 40 ARC REPRESSOR AND A SYNTHETIC 22-MER DNA (21 BASE- scop: a.43.1.1 CATH: 1.10.1220.10 1- 52 Dali: DC_3_209_1_2 5- 52 1PAR:C:1 1- 40 ARC REPRESSOR AND A SYNTHETIC 22-MER DNA (21 BASE- scop: a.43.1.1 CATH: 1.10.1220.10 1- 50 Dali: DC_3_209_1_2 5- 50 52 ( 4) 1KX4:D:1 24- 65 HISTONE H2B.2 scop: CATH: Dali: 1KX4:H:1 29- 65 HISTONE H2B.2 scop: CATH: Dali: 1ID3:D:1 36- 71 HISTONE H2B.2 scop: a.22.1.1 CATH: Dali: 1ID3:H:1 35- 71 HISTONE H2B.2 scop: a.22.1.1 CATH: Dali: 53 ( 2) 1F66:E:1 654- 701 HISTONE H3 scop: a.22.1.1 CATH: 1.10.20.10 633- 735 Dali: 1ID3:A:1 54- 101 HISTONE H3 scop: a.22.1.1 CATH: Dali: 54 ( 2) 1KU7:A:1 366- 426 SIGMA FACTOR SIGA scop: a.112.1.1 CATH: Dali: 1L9Z:H:3 372- 426 SIGMA FACTOR SIGA scop: i.8.1.1 CATH: Dali: 55 ( 2) 1RCS:A:1 52- 88 TRP REPRESSOR scop: a.107.1.1 CATH: 1.10.1270.10 4- 107 Dali: DC_3_155_3_1 43- 107 1RCS:B:1 552- 588 TRP REPRESSOR scop: a.107.1.1 CATH: 1.10.1270.10 504- 607 Dali: DC_3_155_3_1 543- 607 56 (14) 1IO4:B:1 265- 334 CAAT/ENHANCER BINDING PROTEIN BETA scop: h.1.3.1 CATH: 1.20.5.340 265- 334 Dali: 1YSA:C:1 225- 281 GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH A scop: h.1.3.1 CATH: 1.20.5.170 225- 281 Dali: DC_3_119_1_3 229- 277 1YSA:D:1 224- 280 GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH A scop: h.1.3.1 CATH: 1.20.5.170 224- 280 Dali: DC_3_119_1_3 229- 277 1DH3:A:1 285- 339 TRANSCRIPTION FACTOR CREB scop: h.1.3.1 CATH: 1.20.5.170 285- 339 Dali: DC_3_119_1_1 288- 339 1GD2:H:1 76- 139 TRANSCRIPTION FACTOR PAP1 scop: h.1.3.1 CATH: 1.20.5.170 76- 139 Dali: 1GD2:G:1 76- 139 TRANSCRIPTION FACTOR PAP1 scop: h.1.3.1 CATH: 1.20.5.170 76- 139 Dali: 1GD2:E:1 75- 139 TRANSCRIPTION FACTOR PAP1 scop: h.1.3.1 CATH: 1.20.5.170 75- 139 Dali: 1H89:B:1 273- 336 CAAT/ENHANCER BINDING PROTEIN BETA scop: h.1.3.1 CATH: Dali: 1HJB:D:1 268- 335 CCAAT/ENHANCER BINDING PROTEIN BETA scop: h.1.3.1 CATH: 1.20.5.340 268- 335 Dali: 1FOS:H:1 265- 322 C-JUN PROTO-ONCOGENE (TRANSCRIPTION FACTOR AP-1) D scop: h.1.3.1 CATH: Dali: 1FOS:E:1 139- 198 C-JUN PROTO-ONCOGENE (TRANSCRIPTION FACTOR AP-1) D scop: h.1.3.1 CATH: Dali: 1A02:J:1 267- 318 C-JUN scop: h.1.3.1 CATH: 1.20.5.170 267- 318 Dali: DC_3_119_1_1 267- 318 1A02:F:1 140- 192 C-FOS scop: h.1.3.1 CATH: 1.20.5.170 140- 192 Dali: DC_3_119_1_2 140- 192 2DGC:A:1 229- 277 GCN4 scop: h.1.3.1 CATH: 1.20.5.170 229- 277 Dali: DC_3_119_1_3 229- 277 57 ( 2) 1MNM:B:1 36- 98 MCM1 TRANSCRIPTIONAL REGULATOR scop: d.88.1.1 CATH: Dali: DC_3_15_2_1 18- 98 1HBX:A:1 161- 223 SERUM RESPONSE FACTOR scop: d.88.1.1 CATH: Dali: 58 ( 2) 1MSW:D:3 151- 200 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1H38:B:3 151- 198 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 59 ( 3) 1L3S:A:5 751- 802 DNA POLYMERASE I scop: CATH: Dali: 3KTQ:A:5 707- 759 LARGE FRAGMENT OF DNA POLYMERASE I scop: e.8.1.1 423- 831 CATH: 1.10.473.10 614- 757 Dali: DC_3_8_4_2 711- 759 1KLN:A:6 803- 854 DNA POLYMERASE I (KLENOW FRAGMENT) (E.C.2.7.7.7) M scop: e.8.1.1 519- 928 CATH: Dali: DC_3_8_4_2 806- 854 60 ( 2) 1PYI:B:1 30- 80 PYRIMIDINE PATHWAY REGULATOR 1 (PPR1) (RESIDUES 29 scop: g.38.1.1 30- 71 CATH: Dali: DC_7_221_1_1 30- 99 1PYI:A:1 30- 81 PYRIMIDINE PATHWAY REGULATOR 1 (PPR1) (RESIDUES 29 scop: g.38.1.1 30- 71 CATH: Dali: DC_7_221_1_1 30- 117 61 ( 3) 1D66:B:1 8- 43 GAL4 (RESIDUES 1 - 65) COMPLEX WITH 19MER DNA scop: g.38.1.1 8- 48 CATH: 4.10.240.10 8- 64 Dali: DC_6_193_1_2 8- 64 1D66:A:1 8- 43 GAL4 (RESIDUES 1 - 65) COMPLEX WITH 19MER DNA scop: g.38.1.1 8- 48 CATH: 4.10.240.10 8- 64 Dali: DC_6_193_1_2 8- 64 1ZME:C:1 31- 65 PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR scop: g.38.1.1 31- 66 CATH: 4.10.240.10 31- 100 Dali: DC_6_193_1_1 31- 100 62 ( 6) 2RAM:B:2 189- 291 TRANSCRIPTION FACTOR NF-KB P65 scop: b.1.1.5 192- 291 CATH: 2.60.40.450 189- 291 Dali: DC_2_27_20_3 192- 290 1VKX:B:3 546- 650 NF-KAPPA-B P50 scop: b.1.1.5 547- 650 CATH: 2.60.40.450 543- 650 Dali: DC_2_27_20_3 546- 649 1IMH:C:2 366- 468 NUCLEAR FACTOR OF ACTIVATED T CELLS 5 scop: b.1.1.5 368- 468 CATH: Dali: 1GJI:B:2 180- 281 C-REL PROTO-ONCOGENE PROTEIN scop: b.1.1.5 182- 281 CATH: Dali: 1A02:N:2 575- 678 NFAT scop: b.1.1.5 577- 678 CATH: 2.60.40.450 570- 678 Dali: DC_2_27_20_4 570- 678 1A3Q:B:3 223- 327 NUCLEAR FACTOR-KAPPA-B P52 scop: b.1.1.5 227- 327 CATH: 2.60.40.450 223- 326 Dali: DC_2_27_20_3 226- 327 63 ( 2) 1H38:B:1 2- 73 253- 267 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1MSW:D:1 2- 73 250- 267 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 64 ( 2) 1J5O:B:2 238- 251 316- 430 REVERSE TRANSCRIPTASE scop: CATH: Dali: 1RTD:B:3 316- 429 REVERSE TRANSCRIPTASE scop: CATH: Dali: DC_6_6_11_1 307- 346 65 ( 7) 1KX4:D:2 66- 122 HISTONE H2B.2 scop: CATH: Dali: 1ID3:D:2 72- 128 HISTONE H2B.2 scop: a.22.1.1 CATH: Dali: 1ID3:H:2 72- 118 HISTONE H2B.2 scop: a.22.1.1 CATH: Dali: 1F66:G:2 1060-1110 HISTONE H2A.Z scop: a.22.1.1 CATH: 1.10.20.10 1016-1122 Dali: 1F66:C:2 864- 908 HISTONE H2A.Z scop: a.22.1.1 CATH: 1.10.20.10 816- 918 Dali: 1AOI:C:1 57- 108 HISTONE H2A scop: a.22.1.1 CATH: 1.10.20.10 4- 118 Dali: DC_3_123_1_8 4- 118 1JFI:B:2 149- 195 MOL_ID: 1; MOLECULE: TRANSCRIPTION REGULATOR NC2 A scop: a.22.1.3 CATH: 1.10.20.10 109- 243 Dali: 66 ( 2) 1ZME:C:2 66- 100 PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR scop: h.1.3.1 67- 100 CATH: 4.10.240.10 31- 100 Dali: DC_6_193_1_1 31- 100 1ZME:D:2 66- 100 PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR scop: h.1.3.1 67- 100 CATH: 4.10.240.10 31- 100 Dali: DC_6_193_1_1 44- 100 67 ( 2) 1D02:A:2 47- 81 TYPE II RESTRICTION ENZYME MUNI scop: c.52.1.8 CATH: 3.40.580.10 6- 202 Dali: DC_1_11_1_1 6- 202 1D02:B:2 47- 81 TYPE II RESTRICTION ENZYME MUNI scop: c.52.1.8 CATH: 3.40.580.10 3- 202 Dali: DC_1_11_1_1 6- 202 68 ( 3) 1L3S:A:3 641- 657 803- 876 DNA POLYMERASE I scop: CATH: Dali: 2KTQ:A:3 599- 614 760- 832 LARGE FRAGMENT OF DNA POLYMERASE I scop: e.8.1.1 423- 832 CATH: 3.30.70.370 564- 613 758- 831 Dali: DC_5_3_19_1 603- 612 761-9999 1T7P:A:5 456- 479 618- 704 DNA POLYMERASE scop: e.8.1.1 211- 704 CATH: 3.30.70.370 415- 477 590- 704 Dali: DC_6_23_19_3 223- 235 409- 503 69 ( 4) 4CRX:A:1 296- 331 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: 1.10.443.10 132- 331 Dali: 3CRX:A:1 296- 331 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: 1.10.443.10 132- 331 Dali: 1CRX:A:1 296- 331 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: 1.10.443.10 132- 331 Dali: 2CRX:A:1 296- 331 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: 1.10.443.10 132- 331 Dali: 70 ( 2) 1NFK:B:2 142- 206 NUCLEAR FACTOR KAPPA-B scop: b.2.5.1 39- 250 CATH: 1.10.15.20 143- 205 Dali: DC_6_154_1_1 143- 205 1SVC:P:2 145- 209 TRANSCRIPTION FACTOR NFKB scop: b.2.5.1 43- 250 CATH: 1.10.15.20 146- 208 Dali: DC_6_154_1_1 146- 208 71 ( 4) 1BDX:C:2 157- 203 RUVA PROTEIN scop: a.5.1.1 156- 203 CATH: Dali: DC_3_135_1_1 158- 203 1BDX:D:2 157- 203 RUVA PROTEIN scop: a.5.1.1 156- 203 CATH: Dali: DC_3_135_1_1 158- 203 1BDX:A:2 157- 203 RUVA PROTEIN scop: a.5.1.1 156- 203 CATH: Dali: DC_3_135_1_1 158- 203 1BDX:B:2 157- 203 RUVA PROTEIN scop: a.5.1.1 156- 203 CATH: Dali: DC_3_135_1_1 158- 203 72 ( 2) 1M06:F:3 175- 210 CAPSID PROTEIN scop: CATH: Dali: 2BPA:1:3 174- 209 BACTERIOPHAGE PHIX174 CAPSID PROTEINS GPF, GPG, GP scop: b.10.1.1 CATH: 2.60.169.10 1- 426 Dali: 73 ( 2) 1FW6:A:5 327- 411 494- 523 DNA MISMATCH REPAIR PROTEIN MUTS scop: a.113.1.1 267- 541 CATH: Dali: 1EWQ:A:4 332- 411 494- 520 739- 765 DNA MISMATCH REPAIR PROTEIN MUTS scop: a.113.1.1 267- 541 c.37.1.12 542- 765 CATH: 3.40.50.300 543- 765 Dali: 74 6MHT:A:1 1- 327 CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI scop: c.66.1.10 CATH: 3.10.90.10 187- 284 3.40.50.150 1- 186 285- 327 Dali: DC_1_1_37_1 1- 183 307- 327 DC_7_23_1_1 212- 273 75 1DEW:A:1 41- 318 MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE scop: d.151.1.1 CATH: 3.60.10.10 41- 318 Dali: DC_1_40_2_1 44- 318 76 1N6Q:A:1 1- 243 REVERSE TRANSCRIPTASE scop: CATH: Dali: 77 1FJX:A:1 1- 183 276- 327 HHAI DNA METHYLTRANSFERASE scop: c.66.1.10 CATH: 3.10.90.10 188- 303 3.40.50.150 1- 187 304- 327 Dali: DC_1_1_37_1 1- 183 307- 327 78 1DNK:A:1 1- 260 DEOXYRIBONUCLEASE I (DNASE I) (E.C.3.1.21.1) COMPL scop: d.151.1.1 CATH: 3.60.10.10 1- 260 Dali: DC_1_40_2_3 1- 260 79 1KLN:A:1 324- 538 DNA POLYMERASE I (KLENOW FRAGMENT) (E.C.2.7.7.7) M scop: c.55.3.5 324- 518 CATH: Dali: DC_6_7_1_2 330- 518 80 1IF1:B:1 8- 111 INTERFERON REGULATORY FACTOR 1 scop: a.4.5.23 CATH: 1.10.10.10 8- 111 Dali: DC_6_157_1_1 9- 111 81 2HDC:A:1 2- 98 HNF3/FH TRANSCRIPTION FACTOR GENESIS scop: a.4.5.14 CATH: 1.10.10.10 2- 98 Dali: DC_3_153_1_15 2- 93 82 1A31:A:4 437- 593 TOPOISOMERASE I scop: d.163.1.2 431- 626 720- 765 CATH: 3.90.15.10 431- 580 Dali: DC_6_176_2_1 453- 586 83 1BF5:A:2 313- 488 STAT-1 scop: b.2.5.1 317- 568 CATH: 1.10.238.10 461- 581 2.60.40.630 318- 460 Dali: DC_2_27_30_3 316- 458 84 1F4K:B:1 8- 110 REPLICATION TERMINATION PROTEIN scop: a.4.5.7 CATH: 1.10.10.10 8- 122 Dali: 85 1UAA:B:1 2- 106 186- 273 ATP-DEPENDENT DNA HELICASE REP scop: c.37.1.13 2- 307 CATH: 3.40.50.300 2- 107 185- 273 Dali: DC_1_15_1_13 14- 105 187- 241 DC_3_98_1_1 242- 251 274- 309 86 1MSW:D:8 571- 687 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 87 1M06:F:1 10- 174 211- 291 390- 421 CAPSID PROTEIN scop: CATH: Dali: 88 1D0E:A:1 20- 278 REVERSE TRANSCRIPTASE scop: e.8.1.2 CATH: 3.10.10.10 52- 121 166- 187 3.30.70.270 25- 50 125- 158 Dali: DC_5_3_24_2 24- 46 125- 158 DC_6_61_1_2 47- 124 159- 193 89 1H38:B:6 533- 570 688- 883 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 90 6CRO:A:1 2- 61 CRO scop: a.35.1.2 CATH: 3.30.240.10 2- 61 Dali: DC_3_18_1_1 3- 58 91 1BG1:A:4 233- 269 317- 497 546- 566 STAT3B scop: a.47.1.1 136- 321 b.2.5.1 322- 575 CATH: 1.10.238.10 467- 588 1.20.1050.20 138- 321 Dali: DC_2_27_30_3 320- 464 DC_3_35_16_1 136- 319 92 1JB7:A:2 200- 319 TELOMERE-BINDING PROTEIN ALPHA SUBUNIT scop: b.40.4.3 205- 328 CATH: 2.40.50.10 211- 326 Dali: 93 1H9D:A:1 54- 178 CORE-BINDING FACTOR ALPHA SUBUNIT1 scop: b.2.5.1 CATH: 2.60.40.720 54- 178 Dali: 94 1D3U:B:1 1100-1207 TRANSCRIPTION INITIATION FACTOR IIB scop: a.74.1.2 1100-1205 CATH: 1.10.472.10 1108-1206 Dali: DC_3_134_1_5 1108-1206 95 1CMA:A:1 1- 104 MET REPRESSOR-OPERATOR COMPLEX (METJ) scop: a.43.1.2 CATH: 1.10.140.10 1- 104 Dali: DC_6_170_1_3 1- 104 96 1EJ9:A:2 594- 765 DNA TOPOISOMERASE I scop: d.163.1.2 431- 633 714- 765 CATH: 1.10.132.10 591- 633 714- 764 Dali: DC_3_140_2_1 587- 633 714- 724 DC_7_144_1_1 725- 765 97 1K3X:A:2 124- 262 ENDONUCLEASE VIII scop: CATH: Dali: 98 1JX4:A:4 175- 240 DNA POLYMERASE IV (FAMILY Y) scop: e.8.1.5 CATH: Dali: 99 3ORC:A:1 2- 66 CRO REPRESSOR scop: a.35.1.2 CATH: 3.30.240.10 2- 66 Dali: DC_3_18_1_1 3- 66 100 1JEY:B:1 6- 243 478- 517 KU80 scop: e.31.1.2 CATH: Dali: 101 3PJR:A:1 4- 116 184- 282 HELICASE PCRA scop: c.37.1.13 4- 318 CATH: Dali: DC_1_15_1_13 23- 113 196- 250 DC_3_98_1_1 251- 260 283- 318 102 1UAA:B:5 107- 185 ATP-DEPENDENT DNA HELICASE REP scop: c.37.1.13 2- 307 CATH: 1.10.10.160 108- 181 Dali: DC_3_165_1_1 106- 186 103 3HTS:B:1 192- 282 HEAT SHOCK TRANSCRIPTION FACTOR scop: a.4.5.22 CATH: 1.10.10.10 192- 282 Dali: DC_6_157_1_3 193- 282 104 1J5O:A:4 319- 425 REVERSE TRANSCRIPTASE scop: e.8.1.2 1- 429 CATH: Dali: 105 1MJQ:I:1 1- 11 26- 104 METHIONINE REPRESSOR scop: a.43.1.2 CATH: 1.10.140.10 1- 104 Dali: DC_6_170_1_3 1- 104 106 1FZP:D:1 2- 111 STAPHYLOCOCCAL ACCESSORY REGULATOR A scop: a.4.5.28 CATH: Dali: 107 1LB2:B:1 250- 321 MOL_ID: 1; MOLECULE: CATABOLITE GENE ACTIVATOR PRO scop: CATH: Dali: 108 1I8M:L:1 1- 107 MOL_ID: 1; MOLECULE: ANTIBODY LIGHT CHAIN FAB; CHA scop: b.1.1.1 1- 107 CATH: Dali: 109 1MSW:D:6 533- 570 688- 738 774- 883 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 110 1JX4:A:1 2- 12 77- 174 DNA POLYMERASE IV (FAMILY Y) scop: e.8.1.5 CATH: Dali: 111 1I8M:B:1 1- 113 MOL_ID: 1; MOLECULE: ANTIBODY LIGHT CHAIN FAB; CHA scop: b.1.1.1 1- 113 CATH: Dali: 112 1K6O:B:1 164- 206 SERUM RESPONSE FACTOR scop: d.88.1.1 CATH: Dali: 113 1KIX:A:2 210- 298 TELOMERE-BINDING PROTEIN ALPHA SUBUNIT scop: b.40.4.3 205- 318 CATH: Dali: 114 4CRO:A:1 4- 55 CRO REPRESSOR scop: a.35.1.2 CATH: Dali: DC_3_18_1_1 3- 61 115 2PJR:F:4 817- 883 HELICASE PCRA scop: c.37.1.13 704-1018 CATH: 1.10.10.160 816- 890 Dali: DC_3_165_1_1 814- 895 116 2BPA:1:1 1- 173 210- 297 358- 426 BACTERIOPHAGE PHIX174 CAPSID PROTEINS GPF, GPG, GP scop: b.10.1.1 CATH: 2.60.169.10 1- 426 Dali: DC_2_43_4_1 1- 166 234- 297 117 1GDT:B:1 1- 119 GAMMA-DELTA RESOLVASE scop: c.53.1.1 1- 140 CATH: 3.40.50.1390 1- 98 Dali: DC_1_5_3_1 1- 122 118 1A31:A:3 594- 765 TOPOISOMERASE I scop: d.163.1.2 431- 626 720- 765 CATH: 1.10.132.10 591- 626 720- 763 Dali: DC_3_140_2_1 587- 626 720- 724 DC_7_144_1_1 725- 765 119 1E3M:B:1 15- 116 DNA MISMATCH REPAIR PROTEIN MUTS scop: d.75.2.1 14- 116 CATH: Dali: 120 1EFA:B:2 51- 161 291- 321 LAC REPRESSOR scop: c.93.1.1 61- 331 CATH: 3.40.50.2300 60- 160 291- 317 Dali: DC_1_1_1_2 61- 160 293- 318 121 1JEY:A:1 34- 252 KU70 scop: e.31.1.1 CATH: Dali: 122 4BDP:A:1 297- 483 DNA POLYMERASE I scop: c.55.3.5 297- 468 CATH: 3.30.420.10 297- 490 Dali: DC_6_7_1_1 297- 467 123 1FZP:B:1 14- 91 STAPHYLOCOCCAL ACCESSORY REGULATOR A scop: a.4.5.28 CATH: Dali: 124 1QQA:A:2 49- 142 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR scop: c.93.1.1 59- 340 CATH: 3.40.50.2200 60- 161 292- 323 Dali: DC_1_1_1_2 59- 159 294- 320 125 1HYS:B:3 231- 243 311- 425 HIV-1 REVERSE TRANSCRIPTASE scop: CATH: 3.90.840.10 313- 417 Dali: 126 1JXL:A:1 1- 11 85- 171 DNA POLYMERASE IV (FAMILY Y) scop: e.8.1.5 CATH: Dali: 127 1PDN:C:2 69- 124 PRD PAIRED DOMAIN scop: a.4.1.5 CATH: 1.10.10.10 70- 124 Dali: DC_3_155_1_10 71- 124 128 1A36:A:2 227- 310 TOPOISOMERASE I scop: e.15.1.1 215- 430 CATH: 1.10.10.41 236- 319 Dali: DC_3_227_5_1 230- 318 358- 374 129 1BF5:A:3 560- 710 STAT-1 scop: d.93.1.1 569- 710 CATH: 1.10.238.10 461- 581 3.30.505.10 582- 710 Dali: DC_6_95_1_11 569- 710 130 1BDX:C:1 2- 95 RUVA PROTEIN scop: a.60.2.1 65- 142 b.40.4.2 1- 64 CATH: Dali: DC_3_178_1_4 65- 140 DC_4_10_2_1 1- 64 131 1K4T:A:3 235- 307 DNA TOPOISOMERASE I scop: CATH: Dali: 132 1JH9:A:2 53- 157 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR scop: c.93.1.1 59- 340 CATH: Dali: 133 1C7Y:A:1 1- 69 HOLLIDAY JUNCTION DNA HELICASE RUVA scop: b.40.4.2 1- 64 CATH: Dali: DC_4_10_2_1 1- 64 134 3KTQ:A:1 293- 442 LARGE FRAGMENT OF DNA POLYMERASE I scop: c.55.3.5 293- 422 CATH: 3.30.420.10 293- 446 Dali: DC_6_7_1_2 295- 422 135 2PJR:A:5 125- 182 HELICASE PCRA scop: c.37.1.13 7- 318 CATH: 1.10.10.160 116- 190 Dali: DC_3_165_1_1 114- 195 136 1RTD:D:1 3- 238 REVERSE TRANSCRIPTASE scop: CATH: Dali: DC_3_219_1_1 93- 103 231- 429 DC_5_3_24_1 107- 112 167- 217 137 1N5Y:B:2 238- 315 420- 429 REVERSE TRANSCRIPTASE scop: CATH: Dali: 138 1J5O:B:3 252- 315 REVERSE TRANSCRIPTASE scop: CATH: Dali: 139 1LBG:B:3 62- 151 LACTOSE OPERON REPRESSOR scop: c.93.1.1 61- 357 CATH: Dali: DC_1_1_1_1 61- 162 291- 320 140 1BG1:A:3 567- 716 STAT3B scop: d.93.1.1 576- 716 CATH: 1.10.238.10 467- 588 3.30.505.10 589- 711 Dali: DC_6_95_1_11 576- 716 141 1HYS:B:1 1- 230 HIV-1 REVERSE TRANSCRIPTASE scop: CATH: 3.10.10.10 1- 90 116- 156 3.30.70.270 91- 115 157- 235 Dali: 142 1CEZ:A:4 571- 687 BACTERIOPHAGE T7 RNA POLYMERASE scop: e.8.1.3 CATH: Dali: DC_3_155_7_1 569- 688