#================================================================================================== # The list of 186 representative DNA-binding domains which don't have structural neighbours at # Rmsd < 3.5; Z-score (CE) > 4.1; # the length of alignment > 70% of the domain length #================================================================================================== 1QLN:A:1 6- 353 391- 447 738- 773 BACTERIOPHAGE T7 RNA POLYMERASE scop: e.8.1.3 CATH: 1.20.15.190 326- 411 3.30.70.370 421- 449 528- 553 Dali: DC_3_176_2_1 6- 44 147- 165 DC_3_176_3_1 329- 355 393- 410 1ECR:A:1 5- 180 227- 309 REPLICATION TERMINATOR PROTEIN scop: e.2.1.1 CATH: 3.50.14.10 6- 173 236- 281 Dali: DC_3_35_24_1 5- 31 108- 159 DC_7_148_1_1 32- 107 160- 174 1LWT:A:2 181- 415 ENDONUCLEASE PI-SCEI scop: CATH: Dali: 1EYG:D:1 4001-4115 SINGLE-STRAND DNA-BINDING PROTEIN scop: b.40.4.3 CATH: 2.40.50.10 4001-4115 Dali: DC_4_10_1_6 4002-4113 1QUM:A:1 1- 279 ENDONUCLEASE IV scop: c.1.15.1 CATH: 3.20.20.150 1- 279 Dali: DC_1_35_2_3 1- 279 1D2I:A:1 2- 223 RESTRICTION ENDONUCLEASE BGLII; CHAIN: A, B scop: c.52.1.5 CATH: 3.40.91.20 2- 223 Dali: DC_1_11_1_4 1- 31 53- 173 DC_7_192_1_1 32- 52 174- 202 1VAS:A:1 2- 138 ENDONUCLEASE V scop: a.18.1.1 CATH: 1.10.440.10 2- 138 Dali: DC_3_57_1_1 2- 138 1M6X:D:2 137- 422 FLP RECOMBINASE scop: CATH: Dali: 1HHT:R:1 1- 515 647- 664 P2 PROTEIN scop: e.8.1.6 CATH: Dali: 1MNN:A:1 33- 335 NDT80 PROTEIN scop: CATH: Dali: 1IPP:A:1 2- 146 INTRON-ENCODED ENDONUCLEASE I-PPOI scop: d.4.1.3 CATH: 3.90.75.10 2- 163 Dali: DC_3_213_1_1 3- 27 39- 119 DC_7_372_1_1 28- 38 120- 148 2BAM:B:1 1- 210 ENDONUCLEASE BAMHI scop: c.52.1.3 CATH: 3.40.91.20 1- 210 Dali: DC_1_11_1_5 1- 36 57- 181 DC_7_89_1_1 37- 56 182- 196 1EWN:A:1 82- 295 3-METHYL-ADENINE DNA GLYCOSYLASE scop: b.46.1.2 CATH: 3.10.300.10 82- 295 Dali: DC_6_187_1_1 82- 295 1EYU:A:1 19- 157 TYPE II RESTRICTION ENZYME PVUII scop: c.52.1.6 CATH: 3.40.210.10 2- 157 Dali: DC_1_81_1_3 2- 157 1DC1:A:1 5- 31 134- 323 BSOBI RESTRICTION ENDONUCLEASE scop: c.52.1.11 CATH: Dali: 1DMU:A:1 1- 299 BGLI RESTRICTION ENDONUCLEASE scop: c.52.1.4 CATH: 3.40.600.20 1- 299 Dali: DC_1_81_1_1 1- 147 160- 178 DC_7_377_1_1 148- 159 179- 191 1EMH:A:1 82- 304 URACIL-DNA GLYCOSYLASE scop: c.18.1.1 CATH: 3.40.470.10 82- 304 Dali: DC_1_2_9_2 87- 304 1CLQ:A:2 109- 344 DNA POLYMERASE scop: c.55.3.5 1- 375 CATH: 3.30.420.10 107- 360 Dali: DC_6_7_1_4 109- 151 186- 272 DC_6_8_3_1 273- 301 326- 340 1QPS:A:1 17- 277 ENDONUCLEASE ECORI scop: c.52.1.1 CATH: 3.40.580.10 17- 277 Dali: DC_1_11_1_2 33- 114 141- 170 DC_7_185_1_1 115- 140 171- 201 1IAW:B:1 10- 176 TYPE II RESTRICTION ENZYME NAEI scop: c.52.1.9 CATH: Dali: 1IAW:A:2 173- 313 TYPE II RESTRICTION ENZYME NAEI scop: c.52.1.9 CATH: Dali: 1JEY:A:2 253- 443 KU70 scop: e.31.1.1 CATH: Dali: 1FIU:D:1 1- 286 TYPE II RESTRICTION ENZYME NGOMI scop: c.52.1.10 CATH: Dali: 1FOK:A:1 4- 152 FOKI RESTRICTION ENDONUCLEASE scop: a.4.5.12 4- 143 CATH: 3.90.241.10 4- 292 Dali: DC_3_153_2_1 15- 141 DC_3_163_1_1 5- 14 158- 281 1MOW:A:1 5- 113 CHIMERA OF HOMING ENDONUCLEASE I-DMOI AND DNA ENDO scop: CATH: Dali: 1CW0:A:1 17- 156 DNA MISMATCH ENDONUCLEASE scop: c.52.1.15 CATH: 3.40.960.10 2- 156 Dali: DC_1_11_1_3 23- 156 1JEY:B:3 244- 430 KU80 scop: e.31.1.2 CATH: Dali: 1JX4:A:3 241- 341 DNA POLYMERASE IV (FAMILY Y) scop: e.8.1.5 CATH: Dali: 1IGN:B:1 360- 445 575- 594 RAP1 scop: a.4.1.6 360- 445 CATH: 1.10.10.60 361- 446 578- 591 Dali: DC_3_155_1_6 360- 415 1KQQ:A:1 3- 133 DEAD RINGER PROTEIN scop: a.4.3.1 CATH: Dali: 1KSY:A:1 159- 303 REPLICATION PROTEIN E1 scop: d.89.1.2 CATH: Dali: 1MUS:A:4 187- 320 TN5 TRANSPOSASE scop: CATH: Dali: 1DIZ:B:1 1- 282 3-METHYLADENINE DNA GLYCOSYLASE II scop: a.96.1.3 100- 282 d.129.1.2 1- 99 CATH: 1.10.15.10 231- 282 1.10.340.10 113- 230 Dali: DC_6_160_1_4 1- 275 1G38:A:1 21- 243 MODIFICATION METHYLASE TAQI scop: c.66.1.10 CATH: 3.40.50.150 21- 243 Dali: 1M5R:B:1 1- 172 335- 351 DNA BETA-GLUCOSYLTRANSFERASE scop: CATH: Dali: 1I7D:A:2 46- 80 160- 197 574- 620 DNA TOPOISOMERASE III scop: e.10.1.1 CATH: Dali: 1LQ1:D:1 151- 264 STAGE 0 SPORULATION PROTEIN A scop: a.4.6.3 CATH: Dali: 1HLV:A:1 1- 69 MAJOR CENTROMERE AUTOANTIGEN B scop: a.4.1.7 1- 66 CATH: Dali: 1B3T:A:1 473- 607 NUCLEAR PROTEIN EBNA1 scop: d.58.8.1 CATH: 3.30.70.390 461- 607 Dali: DC_5_3_15_1 494- 607 1MTL:A:1 2- 164 G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE scop: CATH: Dali: 1N3C:A:3 133- 261 N-GLYCOSYLASE/DNA LYASE scop: CATH: Dali: 1LLI:B:1 1- 92 LAMBDA REPRESSOR MUTANT WITH VAL 36 REPLACED BY LE scop: a.35.1.2 CATH: 1.10.260.10 1- 92 Dali: DC_3_214_1_3 6- 76 1D2I:B:1 2- 31 61- 171 RESTRICTION ENDONUCLEASE BGLII; CHAIN: A, B scop: c.52.1.5 CATH: 3.40.91.20 2- 223 Dali: DC_1_11_1_4 1- 31 53- 173 1GXP:F:1 128- 229 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTE scop: a.4.6.1 CATH: Dali: 1TN9:A:1 3- 71 INTEGRASE scop: d.10.1.1 CATH: 3.30.160.60 3- 71 Dali: DC_6_12_2_1 3- 71 1ERI:A:2 113- 245 ECO RI ENDONUCLEASE (ENDODEOXYRIBONUCLEASE ECORI) scop: c.52.1.1 CATH: 3.40.580.10 17- 277 Dali: DC_1_11_1_2 33- 114 141- 170 DC_7_185_1_1 115- 140 171- 201 1GCC:A:1 144- 206 ATERF1 scop: d.10.1.2 CATH: 3.30.730.10 144- 206 Dali: DC_6_12_1_1 144- 205 1M0E:A:2 184- 275 MODIFICATION METHYLASE HHAI scop: CATH: Dali: 1REP:C:2 153- 246 REPLICATION INITIATION PROTEIN scop: a.4.5.10 144- 246 CATH: 1.10.10.10 156- 246 Dali: DC_6_157_2_1 156- 246 1D02:A:1 6- 46 82- 202 TYPE II RESTRICTION ENZYME MUNI scop: c.52.1.8 CATH: 3.40.580.10 6- 202 Dali: DC_1_11_1_1 6- 202 1TF3:A:1 1- 63 TRANSCRIPTION FACTOR IIIA scop: g.37.1.1 1- 40 g.37.1.1 41- 70 CATH: 3.30.160.60 1- 39 3.30.160.60 40- 69 Dali: DC_6_206_1_2 11- 99 1IXY:A:2 173- 334 DNA BETA-GLUCOSYLTRANSFERASE scop: CATH: Dali: 1IGN:A:2 446- 575 RAP1 scop: a.4.1.6 446- 594 CATH: 1.10.10.60 447- 577 Dali: DC_3_164_1_1 462- 594 1IC8:B:1 175- 278 HEPATOCYTE NUCLEAR FACTOR 1-ALPHA scop: CATH: Dali: 1FLO:D:1 2- 110 FLP RECOMBINASE scop: a.60.9.1 2- 129 CATH: Dali: 1RTD:A:2 426- 554 REVERSE TRANSCRIPTASE scop: c.55.3.1 430- 554 CATH: Dali: DC_6_6_10_2 430- 500 528- 543 DC_6_6_11_1 319- 429 501- 514 1DFM:A:2 32- 60 172- 223 ENDONUCLEASE BGLII scop: c.52.1.5 CATH: 3.40.91.20 2- 223 Dali: DC_7_192_1_1 32- 52 174- 202 1BPZ:A:4 141- 265 DNA POLYMERASE BETA scop: e.9.1.1 92- 335 CATH: 3.30.460.10 149- 271 Dali: DC_6_47_1_1 159- 263 1REP:C:1 15- 152 REPLICATION INITIATION PROTEIN scop: a.4.5.10 15- 143 CATH: 1.10.10.10 15- 155 Dali: DC_3_153_8_1 28- 130 1TSR:B:1 96- 289 P53 TUMOR SUPPRESSOR scop: b.2.5.1 CATH: 2.60.40.720 96- 289 Dali: DC_2_27_30_5 96- 289 1FOK:A:3 153- 287 FOKI RESTRICTION ENDONUCLEASE scop: a.4.5.12 144- 281 CATH: 3.90.241.10 4- 292 Dali: DC_3_163_1_1 5- 14 158- 281 1G4D:A:1 13- 81 REPRESSOR PROTEIN C scop: a.4.5.26 CATH: 1.10.10.340 13- 81 Dali: DC_6_160_1_1 13- 78 1LWT:A:3 88- 149 ENDONUCLEASE PI-SCEI scop: CATH: Dali: 1I3J:A:1 195- 244 INTRON-ASSOCIATED ENDONUCLEASE 1 scop: e.30.1.1 CATH: Dali: 1LWS:A:1 1- 87 150- 180 416- 454 ENDONUCLEASE PI-SCEI scop: CATH: Dali: 2BPG:B:1 9- 95 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH A scop: a.60.6.1 9- 91 CATH: Dali: DC_3_52_3_1 10- 90 1GM5:A:3 100- 152 253- 324 RECG scop: b.40.4.9 106- 285 c.37.1.13 286- 549 CATH: Dali: 1CF7:B:1 68- 149 TRANSCRIPTION FACTOR DP-2 scop: a.4.5.17 CATH: 1.10.10.10 68- 149 Dali: DC_3_153_1_7 68- 149 1MHD:B:1 10- 132 SMAD3 scop: d.164.1.1 CATH: 3.90.520.10 10- 132 Dali: DC_3_213_1_2 10- 132 1F4S:P:1 10- 63 ETHANOL REGULON TRANSCRIPTIONAL FACTOR scop: g.38.1.1 CATH: 4.10.240.10 1- 63 Dali: 1N3C:A:2 104- 132 262- 325 N-GLYCOSYLASE/DNA LYASE scop: CATH: Dali: 1OTC:B:1 10- 155 203- 222 TELOMERE-BINDING PROTEIN BETA SUBUNIT scop: b.40.4.3 CATH: 2.40.200.10 10- 222 Dali: DC_4_10_11_2 38- 138 1HLV:A:2 70- 131 MAJOR CENTROMERE AUTOANTIGEN B scop: a.4.1.7 67- 131 CATH: Dali: 1SKN:P:1 456- 514 TRANSCRIPTION FACTOR SKN-1 scop: a.37.1.1 CATH: 1.10.880.10 456- 529 Dali: DC_3_168_3_1 456- 529 1HUZ:B:2 266- 334 DNA POLYMERASE BETA scop: e.9.1.1 92- 334 CATH: 3.30.210.10 272- 334 Dali: 1MUS:A:2 82- 186 321- 365 TN5 TRANSPOSASE scop: CATH: Dali: 1IG9:A:7 689- 779 868- 891 DNA POLYMERASE scop: e.8.1.1 376- 901 CATH: 1.20.185.10 729- 901 3.90.267.10 361- 728 Dali: 1TRO:C:1 53- 108 TRP REPRESSOR COMPLEX WITH OPERATOR scop: a.107.1.1 CATH: 1.10.1270.10 10- 108 Dali: DC_3_155_3_1 43- 107 1YUJ:A:1 23- 63 GAGA-FACTOR scop: g.37.1.1 CATH: 3.30.160.60 10- 63 Dali: DC_6_206_1_6 10- 63 2GLI:A:1 103- 167 ZINC FINGER PROTEIN GLI1 scop: g.37.1.1 103- 134 g.37.1.1 135- 167 CATH: 3.30.160.60 136- 167 3.30.160.60 103- 135 Dali: DC_7_143_1_1 103- 167 1HHT:P:2 516- 646 P2 PROTEIN scop: e.8.1.6 CATH: Dali: 1HAP:H:1 16- 247 ALPHA-THROMBIN scop: CATH: 2.40.10.10 28- 120 233- 246 2.40.10.10 16- 27 121- 232 Dali: DC_6_108_1_3 18-9999 1TF3:A:2 64- 101 TRANSCRIPTION FACTOR IIIA scop: g.37.1.1 71- 101 CATH: 3.30.160.60 70- 101 Dali: DC_6_206_1_2 11- 99 1LRR:A:1 64- 181 SEQA PROTEIN scop: CATH: Dali: 1IG9:A:3 780- 867 DNA POLYMERASE scop: e.8.1.1 376- 901 CATH: 1.20.185.10 729- 901 Dali: 1IG9:A:4 383- 396 413- 478 562- 592 DNA POLYMERASE scop: e.8.1.1 376- 901 CATH: 3.90.267.10 361- 728 Dali: 2DRP:D:1 102- 138 TRAMTRACK PROTEIN (TWO ZINC-FINGER PEPTIDE) COMPLE scop: g.37.1.1 102- 139 CATH: 3.30.160.60 103- 136 Dali: DC_6_206_1_4 103- 165 1G2F:C:1 155- 189 TATA BOX ZINC FINGER PROTEIN scop: k.12.1.1 CATH: Dali: 3PJR:A:2 383- 542 HELICASE PCRA scop: c.37.1.13 319- 652 CATH: Dali: DC_3_98_2_1 494- 513 1LPQ:A:5 594- 647 701- 724 DNA TOPOISOMERASE I scop: d.163.1.2 431- 633 713- 765 CATH: Dali: 1DC1:B:2 32- 133 BSOBI RESTRICTION ENDONUCLEASE scop: c.52.1.11 CATH: Dali: 1MSW:D:4 268- 342 398- 447 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1I7D:A:4 198- 218 486- 573 DNA TOPOISOMERASE III scop: e.10.1.1 CATH: Dali: 1G38:D:3 264- 359 MODIFICATION METHYLASE TAQI scop: c.66.1.10 CATH: 3.90.220.10 244- 413 Dali: 1JX4:A:2 13- 75 DNA POLYMERASE IV (FAMILY Y) scop: e.8.1.5 CATH: Dali: 1EXJ:A:1 3- 53 MULTIDRUG-EFFLUX TRANSPORTER REGULATOR scop: a.6.1.3 3- 120 CATH: Dali: 8ICE:A:3 96- 140 DNA POLYMERASE BETA scop: e.9.1.1 92- 335 CATH: Dali: DC_3_178_1_6 91- 148 1QAI:A:2 51- 122 159- 184 REVERSE TRANSCRIPTASE scop: e.8.1.2 CATH: 3.10.10.10 52- 121 166- 187 Dali: DC_6_61_1_2 47- 124 159- 193 1KLN:A:4 560- 635 DNA POLYMERASE I (KLENOW FRAGMENT) (E.C.2.7.7.7) M scop: e.8.1.1 519- 928 CATH: Dali: DC_3_41_1_1 548- 643 1I7D:A:1 1- 45 81- 159 DNA TOPOISOMERASE III scop: e.10.1.1 CATH: Dali: 2PJR:B:1 556- 640 HELICASE PCRA scop: CATH: Dali: DC_1_17_1_3 556- 581 611- 650 DC_3_98_1_1 582- 610 2LEF:A:1 13- 51 LYMPHOID ENHANCER-BINDING FACTOR scop: a.21.1.1 CATH: 1.10.30.10 1- 86 Dali: DC_3_191_1_2 1- 86 1EQZ:G:1 16- 53 HISTONE H3 scop: a.22.1.1 CATH: 1.10.20.10 16- 135 Dali: 1MUH:A:3 366- 464 TN5 TRANSPOSASE scop: CATH: Dali: 1TAU:A:5 464- 540 TAQ DNA POLYMERASE scop: e.8.1.1 423- 832 CATH: 1.20.1060.10 447- 561 Dali: DC_3_41_1_1 452- 548 1AN4:B:1 213- 260 USF scop: a.38.1.1 CATH: 4.10.280.10 196- 260 Dali: DC_3_120_3_1 196- 260 1E7J:A:1 12- 48 HIGH MOBILITY GROUP PROTEIN D; SYNONYM: HMG-D scop: a.21.1.1 CATH: 1.10.30.10 1- 74 Dali: 1ECR:A:2 181- 226 REPLICATION TERMINATOR PROTEIN scop: e.2.1.1 CATH: 3.30.54.10 174- 235 295- 309 Dali: DC_3_20_1_1 175- 234 289- 309 1I6H:A:2 13- 26 328- 344 1390-1435 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT scop: e.29.1.1 CATH: Dali: 1I6H:B:3 44- 218 398- 482 DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE scop: e.29.1.2 CATH: Dali: 1QRI:A:1 17- 112 246- 277 ECO RI ENDONCULEASE scop: c.52.1.1 CATH: 3.40.580.10 17- 277 Dali: DC_1_11_1_2 33- 114 141- 170 1LWY:A:2 262- 315 8-OXOGUANINE DNA GLYCOSYLASE scop: CATH: Dali: 1EWQ:A:6 426- 477 DNA MISMATCH REPAIR PROTEIN MUTS scop: a.113.1.1 267- 541 CATH: Dali: 1ZME:D:1 31- 65 PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR scop: g.38.1.1 31- 66 CATH: 4.10.240.10 31- 100 Dali: DC_6_193_1_1 44- 100 1KC6:A:2 57- 111 TYPE II RESTRICTION ENZYME HINCII scop: c.52.1.19 CATH: Dali: 1C7Y:A:2 70- 149 HOLLIDAY JUNCTION DNA HELICASE RUVA scop: a.60.2.1 65- 150 CATH: Dali: DC_3_178_1_4 65- 148 1H38:A:4 327- 342 398- 448 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1HUT:H:2 29- 120 236- 247 ALPHA-THROMBIN (E.C.3.4.21.5) COMPLEXED WITH DNA ( scop: CATH: 2.40.10.10 28- 120 233- 246 Dali: DC_6_108_1_3 18-9999 1FOK:A:4 393- 579 FOKI RESTRICTION ENDONUCLEASE scop: c.52.1.12 387- 579 CATH: 3.40.91.30 401- 578 Dali: DC_1_11_1_6 400- 579 1I6H:A:7 823- 872 1058-1113 1330-1389 1436-1445 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT scop: e.29.1.1 CATH: Dali: 1NOP:A:1 162- 301 TYROSYL-DNA PHOSPHODIESTERASE 1 scop: CATH: Dali: 1DRG:A:2 296- 332 CRE RECOMBINASE scop: d.163.1.1 130- 343 CATH: Dali: 1I6H:A:8 345- 374 436- 510 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT scop: e.29.1.1 CATH: Dali: 1JFI:B:1 109- 148 MOL_ID: 1; MOLECULE: TRANSCRIPTION REGULATOR NC2 A scop: a.22.1.3 CATH: 1.10.20.10 109- 243 Dali: 1A0A:B:1 15- 62 PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4 scop: a.38.1.1 CATH: 4.10.280.10 0- 62 Dali: DC_3_120_2_1 0- 62 1I7D:A:3 289- 414 DNA TOPOISOMERASE III scop: e.10.1.1 CATH: Dali: 1L9Z:H:4 209- 266 SIGMA FACTOR SIGA scop: i.8.1.1 CATH: Dali: 1YTF:C:1 241- 286 YEAST TRANSCRIPTION FACTOR IIA scop: CATH: 2.30.18.10 241- 286 Dali: DC_4_25_1_1 241- 286 1MJE:A:2 2750-2887 BREAST CANCER 2 scop: CATH: Dali: 1IJS:P:1 37- 268 494- 540 CANINE PARVOVIRUS VIRAL COAT PROTEIN (STRAIN D) scop: b.10.1.4 CATH: Dali: DC_2_43_1_26 37- 81 105- 210 DC_7_194_1_1 82- 104 211- 242 1JFI:A:1 10- 46 MOL_ID: 1; MOLECULE: TRANSCRIPTION REGULATOR NC2 A scop: a.22.1.3 CATH: 1.10.20.10 10- 75 Dali: 4CRX:B:2 296- 331 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: 1.10.443.10 132- 331 Dali: 1T7P:A:7 566- 617 DNA POLYMERASE scop: e.8.1.1 211- 704 CATH: 1.10.473.10 478- 589 3.30.70.370 415- 477 590- 704 Dali: 1L3L:B:1 2- 171 TRANSCRIPTIONAL ACTIVATOR PROTEIN TRAR scop: d.110.5.1 2- 171 CATH: Dali: 1MVM:A:1 39- 76 112- 211 -1- 211 458- 538 MURINE MINUTE VIRUS COAT PROTEIN scop: b.10.1.4 CATH: Dali: DC_2_43_1_26 39- 83 107- 213 DC_7_194_1_1 84- 106 214- 246 1A0A:A:1 17- 62 PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4 scop: a.38.1.1 CATH: 4.10.280.10 0- 62 Dali: DC_3_120_2_1 0- 62 1GM5:A:5 554- 711 RECG scop: c.37.1.13 550- 755 CATH: Dali: 1T7P:A:2 94- 185 DNA POLYMERASE scop: c.55.3.5 1- 210 CATH: 3.30.420.10 1- 232 Dali: DC_6_7_1_3 1- 187 1KBU:A:2 296- 331 CRE RECOMBINASE scop: d.163.1.1 130- 341 CATH: Dali: 1I6H:B:4 483- 495 753- 855 970-1103 DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE scop: e.29.1.2 CATH: Dali: 1L9Z:H:2 267- 330 SIGMA FACTOR SIGA scop: i.8.1.1 CATH: Dali: 1F66:F:1 262- 302 HISTONE H4 scop: a.22.1.1 CATH: 1.10.20.10 217- 302 Dali: 1I6H:B:7 856- 969 DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE scop: e.29.1.2 CATH: Dali: 1IG9:A:5 397- 412 593- 688 DNA POLYMERASE scop: e.8.1.1 376- 901 CATH: 3.90.267.10 361- 728 Dali: 1H38:A:1 2- 55 258- 296 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1G38:D:2 244- 263 360- 413 MODIFICATION METHYLASE TAQI scop: c.66.1.10 CATH: 3.90.220.10 244- 413 Dali: 2BPA:3:1 2- 37 BACTERIOPHAGE PHIX174 CAPSID PROTEINS GPF, GPG, GP scop: CATH: Dali: DC_7_348_1_1 2- 37 1LPQ:A:6 725- 765 DNA TOPOISOMERASE I scop: d.163.1.2 431- 633 713- 765 CATH: Dali: 2PJR:A:3 322- 383 HELICASE PCRA scop: c.37.1.13 319- 548 CATH: 3.90.500.16 283- 385 546- 548 Dali: DC_1_17_1_3 319- 382 2PJR:A:4 100- 124 183- 212 HELICASE PCRA scop: c.37.1.13 7- 318 CATH: Dali: 1HUT:H:1 16- 28 121- 235 ALPHA-THROMBIN (E.C.3.4.21.5) COMPLEXED WITH DNA ( scop: CATH: 2.40.10.10 16- 27 121- 232 Dali: DC_6_108_1_3 18-9999 1L9Z:D:2 14- 96 514- 545 RNA POLYMERASE, BETA-PRIME SUBUNIT scop: i.8.1.1 CATH: Dali: 1NOP:B:2 189- 277 TYROSYL-DNA PHOSPHODIESTERASE 1 scop: CATH: Dali: 1MSW:D:7 739- 773 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1LB2:A:1 9- 130 CATABOLITE GENE ACTIVATOR PROTEIN scop: CATH: Dali: 1BDX:D:3 97- 142 RUVA PROTEIN scop: a.60.2.1 65- 142 CATH: Dali: DC_3_178_1_4 65- 140 1IG9:A:1 1- 108 345- 382 DNA POLYMERASE scop: c.55.3.5 1- 375 CATH: 3.30.342.10 1- 106 3.90.267.10 361- 728 Dali: 1A3Q:B:2 141- 186 NUCLEAR FACTOR-KAPPA-B P52 scop: b.2.5.1 37- 226 CATH: 1.10.15.20 142- 185 Dali: DC_6_154_1_1 142- 185 1FOK:A:2 288- 392 FOKI RESTRICTION ENDONUCLEASE scop: a.4.5.12 287- 386 CATH: 1.10.10.10 302- 388 Dali: DC_3_153_1_11 287- 379 1LWY:A:1 9- 134 316- 325 8-OXOGUANINE DNA GLYCOSYLASE scop: CATH: Dali: 1H38:B:7 343- 398 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1UAA:A:2 377- 405 462- 538 ATP-DEPENDENT DNA HELICASE REP scop: c.37.1.13 308- 640 CATH: 1.10.486.10 378- 539 Dali: DC_3_96_2_1 374- 484 1LPQ:A:2 648- 700 DNA TOPOISOMERASE I scop: a.2.8.1 641- 712 CATH: Dali: 1H38:C:8 343- 397 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1H38:D:8 343- 397 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1H38:A:2 343- 397 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1T7P:A:8 263- 332 DNA POLYMERASE scop: e.8.1.1 211- 704 CATH: 1.20.1060.10 233- 414 Dali: DC_7_29_1_1 266- 330 1L9Z:C:2 14- 142 324- 407 RNA POLYMERASE, BETA SUBUNIT scop: i.8.1.1 CATH: Dali: 1H38:A:6 56- 150 199- 257 DNA-DIRECTED RNA POLYMERASE scop: CATH: Dali: 1N3C:A:1 9- 103 N-GLYCOSYLASE/DNA LYASE scop: CATH: Dali: 1I6H:A:3 27- 90 236- 327 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT scop: e.29.1.1 CATH: Dali: 1QAI:A:1 24- 50 123- 158 185- 274 REVERSE TRANSCRIPTASE scop: e.8.1.2 CATH: 3.30.70.270 25- 50 125- 158 Dali: DC_5_3_24_2 44- 46 125- 158 1GD2:I:1 82- 140 TRANSCRIPTION FACTOR PAP1 scop: h.1.3.1 CATH: 1.20.5.170 82- 140 Dali: 1MJQ:G:1 1- 11 58- 104 METHIONINE REPRESSOR scop: a.43.1.2 CATH: 1.10.140.10 1- 104 Dali: DC_6_170_1_3 1- 104 1I6H:B:1 20- 43 496- 554 628- 752 DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE scop: e.29.1.2 CATH: Dali: 1JEY:A:3 458- 534 KU70 scop: e.31.1.1 CATH: Dali: 1CEZ:A:5 354- 390 BACTERIOPHAGE T7 RNA POLYMERASE scop: e.8.1.3 CATH: 1.20.15.190 326- 411 Dali: DC_7_118_1_1 231- 242 356- 392 1JT0:B:2 54- 189 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'R scop: a.121.1.1 73- 189 CATH: Dali: 1YTF:D:2 57- 119 YEAST TRANSCRIPTION FACTOR IIA scop: b.56.1.1 55- 119 CATH: 2.30.18.10 58- 119 Dali: DC_6_113_1_2 5- 119 1L9Z:H:1 93- 208 SIGMA FACTOR SIGA scop: i.8.1.1 CATH: Dali: 1IG9:A:6 479- 561 DNA POLYMERASE scop: e.8.1.1 376- 901 CATH: 3.90.267.10 361- 728 Dali: 1NG9:B:4 295- 436 518- 564 DNA MISMATCH REPAIR PROTEIN MUTS scop: CATH: Dali: 1BF5:A:4 489- 559 STAT-1 scop: b.2.5.1 317- 568 CATH: 1.10.238.10 461- 581 Dali: 1I6H:A:6 91- 235 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT scop: e.29.1.1 CATH: Dali: 1GM5:A:6 325- 420 491- 553 712- 755 RECG scop: c.37.1.13 286- 549 c.37.1.13 550- 755 CATH: Dali: 1OTC:A:3 320- 495 TELOMERE-BINDING PROTEIN ALPHA SUBUNIT scop: b.40.4.3 329- 495 CATH: 2.40.50.10 327- 495 Dali: DC_4_2_1_1 316- 495