Classification of representative DNA-binding domains from PDB at different threshold parameters Rnarthreshold (in case of when consider only structural similarity between domains; Rmsd £ 5.0 Å, Z-score ³ 3.5) and Rmatthreshold (in case of when additionally DNA-protein contacts are considered; 3.0 Å < Rmsd £ 5.0 Å and Rnar ³ 70% or 70% £ Rnar < 80% and Rmsd £ 5.0 Å; if Rmsd £ 3.0 Å and Rnar ³ 80%, then domains are considered as similar without accounting of contacts). "-" in the first 8 columns means that the domain has no structural neighbors.

Automated domain classification accounting domains structure similarity at Rnarthreshold, %

Automated domain classification accounting additionally DNA-protein contacts at Rmat threshold, %

 

 

 

 

PDB ID

 

 

 

Domain boundaries by PDP [1]

 

 

 

 

Chain’s name

 

 

 

Classification by Luscombe et al. [6]

Family (group)

 

 

 

Domain classification by SCOP v. 1.55 [2, 3]

 

 

 

Domain classification by Dali Domain Dictionary v. 3 [4, 5]

70

75

80

60

65

70

75

80

Domain boundaries

  

Domain boundaries

  

Domain boundaries

  

Domain boundaries

  

1

-

-

-

-

-

-

-

1H9D:A:1

54- 178

CORE-BINDING FACTOR ALPHA SUBUNIT1

 

 

1

1

-

-

-

-

-

-

1TSR:B:1

107- 279

P53 TUMOR SUPPRESSOR

19. Loop-sheet-helix family (2.Zinc)

b.2.5.1

96- 289

DC_2_27_30_5_4

  

1

1

1

1

1

1

1

1

1A02:N:2

410- 575

NFAT

37. Rel homology region family (7.Other)

399- 576

b.2.5.1

399- 569

DC_2_27_30_2_1

  

1

1

1

1

1

1

1

1

1A66:A:1

12- 178

CORE NFATC1

b.2.5.1

8- 174

DC_2_27_30_2_2

  

1

1

1

1

1

1

1

1

1BVO:A:1

48- 222

TRANSCRIPTION FACTOR GAMBIF1

37. Rel homology region family (7.Other)

b.2.5.1

48- 152 186- 216

DC_2_27_30_1_13

153- 185

DC_6_154_1_1_13

1

1

1

1

1

1

1

1

1RAM:A:1

19- 193

TRANSCRIPTION FACTOR NF-KB P65

37. Rel homology region family (7.Other)

19- 191

b.2.5.1

19- 121 153- 181

DC_2_27_30_1_8

122- 152

DC_6_154_1_1_8

1

1

1

1

1

1

1

1

1IMH:C:2

199- 365

NUCLEAR FACTOR OF ACTIVATED T CELLS 5

 

 

1

18

16

1

1

1

1

1

1BF5:A:2

313- 471

STAT-1

38. Stat protein family (7.Other)

317- 568

b.2.5.1

316- 458

DC_2_27_30_3_2

  

1

18

16

1

1

1

1

1

1BG1:A:3

317- 497

STAT3B

322- 575

b.2.5.1

320- 464

DC_2_27_30_3_1

  

1

1

3

1

1

3

3

3

1A3Q:A:1

37- 140 187- 227

NUCLEAR FACTOR-KAPPA-B P52

37. Rel homology region family (7.Other)

37- 226

b.2.5.1

37- 141 186- 215

DC_2_27_30_1_1

  

1

1

3

1

1

3

3

3

1NFK:A:1

39- 142 207- 247

NUCLEAR FACTOR KAPPA-B

37. Rel homology region family (7.Other)

39- 250

b.2.5.1

39- 142 206- 235

DC_2_27_30_1_4

  

1

4

4

4

3

4

4

4

1A3Q:A:3

228- 327

NUCLEAR FACTOR-KAPPA-B P52

37. Rel homology region family (7.Other)

227- 327

b.1.1.5

226- 327

DC_2_27_20_3_1

  

1

4

4

4

3

4

4

4

1I8M:L:1

1- 107

ANTIBODY LIGHT CHAIN FAB

 

 

1

4

4

4

3

4

4

4

1I8M:H:1

1- 113

ANTIBODY LIGHT CHAIN FA

 

 

1

4

4

4

3

4

4

4

1NFK:A:3

248- 350

NUCLEAR FACTOR KAPPA-B

37. Rel homology region family (7.Other)

251- 350

b.1.1.5

246- 349

DC_2_27_20_3_4

  

1

4

4

4

3

4

4

4

1RAM:A:2

194- 291

TRANSCRIPTION FACTOR NF-KB P65

37. Rel homology region family (7.Other)

192- 291

b.1.1.5

192- 290

DC_2_27_20_3_8

  

2

2

2

2

2

2

2

2

1A02:F:1

140- 192

C-FOS

21. Leucine zipper family (3.ZIP)

h.1.3.1

140- 192

DC_3_119_1_2_1

  

2

2

2

2

2

2

2

2

1A02:J:1

267- 318

C-JUN

21. Leucine zipper family (3.ZIP)

h.1.3.1

267- 318

DC_3_119_1_1_1

  

2

2

2

2

2

2

2

2

1DGC:A:1

227- 281

GCN4 LEUCINE ZIPPER

21. Leucine zipper family (3.ZIP)

h.1.3.1

229- 277

DC_3_119_1_3_2

  

2

2

2

2

2

2

2

2

2DGC:A:1

229- 277

GCN4

21. Leucine zipper family (3.ZIP)

h.1.3.1

229- 277

DC_3_119_1_3_1

  

2

2

2

2

2

2

2

2

1DH3:A:1

285- 339

TRANSCRIPTION FACTOR CREB

h.1.3.1

288- 339

DC_3_119_1_1_2

  

2

2

2

2

2

2

2

2

1FOS:E:1

139- 198

C-JUN / C-FOS

h.1.3.1

 

 

2

2

2

2

2

2

2

2

1FOS:F:1

266- 322

C-JUN / C-FOS

h.1.3.1

 

 

2

2

2

2

2

2

2

2

1GD2:E:1

75- 139

TRANSCRIPTION FACTOR PAP1

h.1.3.1

 

 

2

2

2

2

2

2

2

2

1GD2:F:1

77- 140

TRANSCRIPTION FACTOR PAP1

h.1.3.1

 

 

2

2

2

2

2

2

2

2

1GD2:G:1

76- 139

TRANSCRIPTION FACTOR PAP1

h.1.3.1

 

 

2

2

2

2

2

2

2

2

1H88:A:1

267- 336

CCAAT/ENHANCER BINDING PROTEIN BETA

 

 

2

2

2

2

2

2

2

2

1H88:B:1

266- 336

CCAAT/ENHANCER BINDING PROTEIN BETA

 

 

2

2

2

2

2

2

2

2

1H89:A:1

273- 336

CAAT/ENHANCER BINDING PROTEIN BETA

 

 

2

2

2

2

2

2

2

2

1H89:B:1

273- 336

CAAT/ENHANCER BINDING PROTEIN BETA

 

 

2

2

2

2

2

2

2

2

1YSA:C:1

225- 281

GCN4 COMPLEX WITH AP-1 DNA

21. Leucine zipper family (3.ZIP)

h.1.3.1

229- 277

DC_3_119_1_3_4

  

2

9

-

9

8

9

9

-

1AN2:A:1

22- 70

MAX PROTEIN

22. Helix-loop-helix family (3.ZIP)

a.38.1.1

22- 107

DC_3_120_1_1_1

  

2

9

-

9

8

9

9

37

1HLO:A:1

3- 82

TRANSCRIPTION FACTOR MAX

22. Helix-loop-helix family (3.ZIP)

a.38.1.1

7- 70

DC_3_120_3_1_3

  

2

9

9

9

8

9

9

37

1MDY:A:1

1- 166

MYOD BASIC-HELIX-LOOP-HELIX (BHLH) MUTANT

22. Helix-loop-helix family (3.ZIP)

a.38.1.1

1- 166

DC_3_120_1_3_1

  

2

9

9

9

8

-

-

-

1AN4:B:1

196- 260

USF

22. Helix-loop-helix family (3.ZIP)

a.38.1.1

196- 260

DC_3_120_3_1_2

  

3

3

-

3

-

-

-

-

1A31:A:4

488- 570

TOPOISOMERASE I

54. Topoisomerase I (8.Enzyme)

431- 626

d.163.1.2

453- 586

DC_6_176_2_1_4

  

3

3

-

3

-

-

-

-

1A36:A:4

461- 570

TOPOISOMERASE I

54. Topoisomerase I (8.Enzyme)

431- 633

d.163.1.2

453- 586

DC_6_176_2_1_1

  

4

5

5

5

4

5

5

5

1A6Y:A:1

99- 175

REVERBA ORPHAN NUCLEAR RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

99- 171

DC_7_162_1_1_12

  

4

5

5

5

4

5

5

5

1BY4:A:1

1131- 1209

RETINOIC ACID RECEPTOR RXR-ALPHA

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

1132- 1209

DC_7_162_1_1_4

  

4

5

5

5

4

5

5

5

1CIT:A:1

230- 302

ORPHAN NUCLEAR RECEPTOR NGFI-B

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

231- 318

DC_7_162_1_1_9

  

4

5

5

5

4

5

5

5

1DSZ:A:1

1134- 1208

RETINOIC ACID RECEPTOR ALPHA

g.39.1.2

1134- 1208

DC_7_162_1_1_2

  

4

5

5

5

4

5

5

5

1DSZ:B:1

1228- 1311

RETINOIC ACID RECEPTOR RXR-ALPHA

g.39.1.2

1232- 1311

DC_7_162_1_1_5

  

4

5

5

5

4

5

5

5

1GLU:A:1

434- 514

GLUCOCORTICOID RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

438- 508

DC_7_162_1_1_17

  

4

5

5

5

4

5

5

5

1GLU:B:1

434- 514

GLUCOCORTICOID RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

438- 508

DC_7_162_1_1_15

  

4

5

5

5

4

5

5

5

1HCQ:A:1

1- 74

HUMAN/CHICKEN ESTROGEN RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

5- 74

DC_7_162_1_1_10

  

4

5

5

5

4

5

5

5

1LAT:A:1

438- 508

GLUCOCORTICOID RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

438- 508

DC_7_162_1_1_8

  

4

5

5

5

4

5

5

5

2NLL:A:1

135- 200

RETINOIC ACID RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

135- 200

DC_7_162_1_1_14

  

4

5

5

5

4

5

5

5

2NLL:B:1

300- 375

THYROID HORMONE RECEPTOR

18. Hormone nuclear receptor family (2.Zinc)

g.39.1.2

300- 402

DC_7_162_1_1_1

  

5

6

6

6

5

6

6

6

1AHD:P:1

1- 67

ANTENNAPEDIA (HOMEODOMAIN) MUTANT

a.4.1.1

5- 59

DC_3_155_1_2_20

  

5

6

6

6

5

6

6

6

1AKH:A:1

77- 125

MATING-TYPE PROTEIN A-1

2. Homeodomain family (1.HTH)

a.4.1.1

77- 125

DC_3_155_1_3_1

  

5

6

6

6

5

6

6

6

1AKH:B:1

128- 191

MATING-TYPE PROTEIN ALPHA-2

2. Homeodomain family (1.HTH)

a.4.1.1

128- 205

DC_3_155_1_5_1

  

5

6

6

6

5

6

6

6

9ANT:A:1

5- 60

ANTENNAPEDIA PROTEIN

2. Homeodomain family (1.HTH)

a.4.1.1

5- 59

DC_3_155_1_2_5

  

5

6

6

6

5

6

6

6

1APL:D:1

132- 189

MAT ALPHA2 HOMEODOMAIN

2. Homeodomain family (1.HTH)

a.4.1.1

132- 189

DC_3_155_1_5_4

  

5

6

6

6

5

6

6

6

1AU7:A:2

106- 160

PIT-1

2. Homeodomain family (1.HTH)

103- 160

a.4.1.1

103- 160

DC_3_155_1_1_1

  

5

6

6

6

5

6

6

6

1B72:A:1

208- 264

HOMEOBOX PROTEIN HOX-B1

2. Homeodomain family (1.HTH)

a.4.1.1

207- 261

DC_3_155_1_2_15

  

5

6

6

6

5

6

6

6

1B72:B:1

235- 307

PBX1

2. Homeodomain family (1.HTH)

a.4.1.1

240- 291

DC_3_155_1_3_4

  

5

6

6

6

5

6

6

6

1B8I:A:1

110- 160

ULTRABITHORAX HOMEOTIC PROTEIN IV

a.4.1.1

105- 159

DC_3_155_1_2_14

  

5

6

6

6

5

6

6

6

1B8I:B:1

205- 262

HOMEOBOX PROTEIN EXTRADENTICLE

a.4.1.1

208- 256

DC_3_155_1_3_3

  

5

6

6

6

5

6

6

6

1CQT:A:2

103- 161

POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1

2. Homeodomain family (1.HTH)

102- 161

a.4.1.1

117- 161

DC_3_155_1_1_5

  

5

6

6

6

5

6

6

6

1DU0:A:1

7- 59

ENGRAILED HOMEODOMAIN

2. Homeodomain family (1.HTH)

a.4.1.1

7- 59

DC_3_155_1_2_3

  

5

6

6

6

5

6

6

6

1FJL:A:1

1- 53

PAIRED PROTEIN

2. Homeodomain family (1.HTH)

a.4.1.1

5- 59

DC_3_155_1_2_16

  

5

6

6

6

5

6

6

6

1H88:C:2

89- 140

MYB PROTO-ONCOGENE PROTEIN

 

 

5

6

6

6

5

6

6

6

1H88:C:3

141- 190

MYB PROTO-ONCOGENE PROTEIN

 

 

5

6

6

6

5

6

6

6

1IG7:A:1

102- 159

HOMEOTIC PROTEIN MSX-1

 

 

5

6

6

6

5

6

6

6

1JGG:A:1

103- 159

SEGMENTATION PROTEIN EVEN-SKIPPED

 

 

5

6

33

6

5

6

6

6

1GDT:A:2

144- 183

GAMMA-DELTA RESOLVASE

5. gamma/delta-resolvase family (1.HTH)

141- 183

a.4.1.2

 

 

5

6

33

6

5

6

6

6

1GDT:B:2

144- 183

GAMMA-DELTA RESOLVASE

5. gamma/delta-resolvase family (1.HTH)

141- 183

a.4.1.2

 

 

5

6

6

6

5

6

6

6

1K78:A:2

84- 142

PAIRED BOX PROTEIN PAX5

 

 

5

6

6

6

5

6

6

6

1MNM:D:1

139- 189

MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR

2. Homeodomain family (1.HTH)

a.4.1.1

134- 189

DC_3_155_1_5_6

  

5

6

6

6

5

6

6

6

1MSE:C:1

89- 133

C-MYB DNA-BINDING DOMAIN

89- 143

a.4.1.3

 

 

5

6

6

6

5

6

6

6

1MSE:C:2

134- 182

C-MYB DNA-BINDING DOMAIN

144- 193

a.4.1.3

145- 192

DC_3_155_1_13_4

  

5

6

6

6

5

6

6

6

1NK2:P:1

114- 161

HOMEOBOX PROTEIN VND

a.4.1.1

111- 175

DC_3_155_1_5_7

  

5

6

6

6

5

6

6

6

1NK3:P:1

111- 152

HOMEOBOX PROTEIN VND

a.4.1.1

105- 159

DC_3_155_1_2_17

  

5

6

6

6

5

6

6

6

6PAX:A:2

69- 133

HOMEOBOX PROTEIN PAX-6

2. Homeodomain family (1.HTH)

a.4.1.5

71- 133

DC_3_155_1_10_1

  

5

6

6

6

5

6

6

6

1PDN:C:2

69- 124

PRD PAIRED DOMAIN

8. Prd paired domain family (1.HTH)

a.4.1.5

71- 124

DC_3_155_1_10_2

  

5

6

6

6

5

6

6

6

1TC3:C:1

202- 252

TC3 TRANSPOSASE

9. Tc3 transposase family (1.HTH)

a.4.1.2

202- 252

DC_3_155_1_8_1

  

5

6

6

6

5

6

6

6

1RCS:A:1

46- 91

TRP REPRESSOR

a.107.1.1

43- 107

DC_3_155_3_1_17

  

5

6

6

6

5

6

6

-

1TRO:A:1

43- 108

TRP REPRESSOR COMPLEX WITH OPERATOR

10. Trp repressor family (1.HTH)

a.107.1.1

43- 107

DC_3_155_3_1_3

  

5

6

6

6

5

6

6

18

1C0W:A:1

2- 72

DIPHTHERIA TOXIN REPRESSOR

11. Diphteria Tox repressor family (1.HTH)

2- 64

a.4.5.24

5- 76

DC_3_153_1_4_11

  

5

6

6

6

5

6

6

18

1BER:A:1

143- 207

CATABOLITE GENE ACTIVATOR; CHAIN: A, B

14. Catabolite gene activator protein family (1.'Winged' HTH)

138- 207

a.4.5.4

 

 

5

6

6

6

5

6

6

18

1CF7:A:1

16- 82

TRANSCRIPTION FACTOR E2F-4

15. Transcription factor family (1.'Winged' HTH)

a.4.5.17

16- 82

DC_3_153_1_8_1

  

5

6

6

6

5

6

6

18

1DB8:A:1

130- 207

CATABOLITE GENE ACTIVATOR PROTEIN

14. Catabolite gene activator protein family (1.'Winged' HTH)

 

 

5

6

6

6

5

6

6

18

1H9T:B:1

5- 79

FATTY ACID METABOLISM REGULATOR PROTEIN

 

 

5

6

6

6

5

6

6

18

1J75:A:1

113- 169

TUMOR STROMA AND ACTIVATED MACROPHAGE PROTEIN DLM-1

 

 

5

6

6

6

5

6

6

18

1QBJ:A:1

147- 198

DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)

a.4.5.19

134- 198

DC_3_153_1_2_1

  

5

6

6

6

5

6

6

18

1QBJ:B:1

136- 198

DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)

a.4.5.19

136- 198

DC_3_153_1_2_3

  

5

6

6

6

5

6

15

14

1BC7:C:1

1- 93

SAP-1

16. Ets domain family (1.'Winged' HTH)

a.4.5.21

5- 86

DC_6_157_1_2_2

  

5

6

6

6

5

6

15

14

1DUX:C:1

21- 90

ETS-DOMAIN PROTEIN ELK-1

a.4.5.21

5- 87

DC_6_157_1_2_4

  

5

6

6

6

5

6

15

14

1K78:B:1

335- 416

C-ETS-1 PROTEIN

 

 

5

6

6

6

5

6

15

14

1PUE:E:1

187- 258

TRANSCRIPTION FACTOR PU.1

16. Ets domain family (1.'Winged' HTH)

a.4.5.21

172- 256

DC_6_157_1_2_6

  

5

6

6

6

5

6

15

14

1PUE:F:1

171- 259

TRANSCRIPTION FACTOR PU.1

16. Ets domain family (1.'Winged' HTH)

a.4.5.21

172- 256

DC_6_157_1_2_7

  

5

6

-

6

5

6

15

14

2STT:A:1

54- 105

ETS1

a.4.5.21

25- 105

DC_6_157_1_2_10

  

5

6

6

6

5

6

15

14

2STW:A:1

40- 105

ETS1

a.4.5.21

25- 105

DC_6_157_1_2_9

  

5

6

-

6

5

6

-

-

1CF7:B:1

68- 149

TRANSCRIPTION FACTOR DP-2

15. Transcription factor family (1.'Winged' HTH)

a.4.5.17

68- 149

DC_3_153_1_7_1

  

5

6

-

6

5

38

-

-

1HLV:A:1

1- 69

MAJOR CENTROMERE AUTOANTIGEN B

 

 

5

6

6

6

5

38

38

39

1K78:A:1

19- 83

PAIRED BOX PROTEIN PAX5

 

 

5

6

6

6

5

38

38

39

6PAX:A:1

1- 68

HOMEOBOX PROTEIN PAX-6

2. Homeodomain family (1.HTH)

a.4.1.5

17- 70

DC_3_155_1_9_1

  

5

6

6

6

5

38

38

39

1PDN:C:1

2- 68

PRD PAIRED DOMAIN

8. Prd paired domain family (1.HTH)

a.4.1.5

17- 70

DC_3_155_1_9_2

  

5

-

-

6

5

-

-

-

1IF1:A:1

25- 111

INTERFERON REGULATORY FACTOR 1

13. Interferon regulatory factor (1.'Winged' HTH)

a.4.5.23

9- 111

DC_6_157_1_1_7

  

5

6

6

6

-

-

-

-

1D5Y:A:1

3- 54

ROB TRANSCRIPTION FACTOR

3- 56

a.4.1.8

 

 

5

6

-

6

-

-

-

-

1HCR:A:1

139- 190

HIN RECOMBINASE (DNA-BINDING DOMAIN)

6. Hin recombinase family (1.HTH)

a.4.1.2

139- 190

DC_3_155_1_12_1

  

5

-

-

6

30

32

-

-

1F4K:A:1

8- 111

REPLICATION TERMINATION PROTEIN

 

 

5

6

-

6

30

32

-

-

2HDC:A:1

2- 84

HNF3/FH TRANSCRIPTION FACTOR GENESIS

a.4.5.14

2- 93

DC_3_153_1_15_2

  

5

6

-

-

-

-

-

-

1D5Y:B:2

55- 124

ROB TRANSCRIPTION FACTOR

57- 121

a.4.1.8

 

 

5

6

6

-

-

-

-

-

3HTS:B:1

204- 282

HEAT SHOCK TRANSCRIPTION FACTOR

15. Transcription factor family (1.'Winged' HTH)

a.4.5.22

193- 282

DC_6_157_1_3_3

  

5

41

38

38

38

40

39

40

1KC6:A:1

57- 111

TYPE II RESTRICTION ENZYME HINCII

 

 

5

41

38

38

38

40

39

40

1KC6:C:1

57- 112

TYPE II RESTRICTION ENZYME HINCII

 

 

5

8

8

8

7

8

8

8

1AIS:B:2

1207- 1300

TRANSCRIPTION INITIATION FACTOR IIB

12. Transcription factor IIB (1.HTH)

1206- 1300

a.74.1.2

1207- 1300

DC_3_134_1_6_1

  

5

8

8

8

7

8

8

8

1C9B:I:1

110- 207

GENERAL TRANSCRIPTION FACTOR IIB

12. Transcription factor IIB (1.HTH)

110- 207

a.74.1.2

111- 206

DC_3_134_1_7_3

  

5

8

-

8

7

8

8

8

1C9B:I:2

208- 316

GENERAL TRANSCRIPTION FACTOR IIB

12. Transcription factor IIB (1.HTH)

208- 316

a.74.1.2

207- 279

DC_3_134_1_11_3

  

5

8

8

8

7

8

8

8

1D3U:B:2

1112- 1206

TRANSCRIPTION INITIATION FACTOR IIB

12. Transcription factor IIB (1.HTH)

1100- 1205

a.74.1.2

1108- 1206

DC_3_134_1_5_2

  

5

17

15

18

17

18

18

17

2BDP:A:5

658- 749

DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

469- 876

e.8.1.1

680- 752

DC_3_155_6_2_3

  

5

17

15

18

17

18

18

17

2KTQ:A:2

623- 705

LARGE FRAGMENT OF DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

423- 832

e.8.1.1

638- 697

DC_3_155_6_1_7

  

5

-

-

18

41

43

42

44

1T7P:A:5

497- 558

DNA POLYMERASE

49. DNA polymerase T7 (8.Enzyme)

211- 704

e.8.1.1

504- 560

DC_3_155_6_3_1

  

5

17

15

18

41

43

42

44

1QSY:A:2

624- 704

DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

423- 831

e.8.1.1

637- 696

DC_3_155_6_1_10

  

5

17

-

-

-

-

-

-

1UAA:A:4

107- 185

ATP-DEPENDENT DNA HELICASE REP

2- 307

c.37.1.13

106- 186

DC_3_165_1_1_6

  

5

17

-

-

-

-

-

-

1C7Y:A:2

66- 149

HOLLIDAY JUNCTION DNA HELICASE RUVA

65- 150

a.60.2.1

65- 148

DC_3_178_1_4_9

  

5

-

-

-

-

-

-

-

1QLN:A:6

619- 684

BACTERIOPHAGE T7 RNA POLYMERASE

e.8.1.3

569- 688

DC_3_155_7_1_3

  

5

-

-

-

-

-

-

-

1REP:C:2

153- 246

REPLICATION INITIATION PROTEIN

144- 246

a.4.5.10

156- 246

DC_6_157_2_1_1

  

6

7

7

7

6

7

7

7

1AIS:A:1

1- 12 105- 181

TATA-BINDING PROTEIN

30. TATA-box binding family (5.Beta-sheet)

1- 92

d.129.1.1

93- 181

d.129.1.1

5- 15 104- 181

DC_5_6_1_2_40

  

6

7

7

7

6

7

7

7

1AIS:A:2

13- 104

TATA-BINDING PROTEIN

30. TATA-box binding family (5.Beta-sheet)

1- 92

d.129.1.1

16- 103

DC_5_6_1_1_40

  

6

7

7

7

6

7

7

7

1C9B:B:1

158- 168 257- 337

TATA BOX BINDING PROTEIN

30. TATA-box binding family (5.Beta-sheet)

158- 252

d.129.1.1

253- 337

d.129.1.1

159- 169 257- 337

DC_5_6_1_2_11

  

6

7

7

7

6

7

7

7

1C9B:B:2

169- 256

TATA BOX BINDING PROTEIN

30. TATA-box binding family (5.Beta-sheet)

158- 252

d.129.1.1

170- 256

DC_5_6_1_1_11

  

6

7

7

7

6

7

7

7

1D3U:A:1

1- 12 105- 171

TATA-BINDING PROTEIN

30. TATA-box binding family (5.Beta-sheet)

1- 92

d.129.1.1

93- 181

d.129.1.1

5- 15 104- 180

DC_5_6_1_2_39

  

6

7

7

7

6

7

7

7

1QN3:A:1

16- 26 118- 198

TRANSCRIPTION INITIATION FACTOR TFIID-1

30. TATA-box binding family (5.Beta-sheet)

16- 115

d.129.1.1

116- 198

d.129.1.1

19- 29 117- 198

DC_5_6_1_2_14

  

6

7

7

7

6

7

7

7

1QN3:A:2

27- 117

TRANSCRIPTION INITIATION FACTOR TFIID-1

30. TATA-box binding family (5.Beta-sheet)

16- 115

d.129.1.1

30- 116

DC_5_6_1_1_14

  

6

7

7

7

6

7

7

7

1QN8:B:1

117- 198

TRANSCRIPTION INITIATION FACTOR TFIID-1

116- 198

d.129.1.1

19- 29 117- 198

DC_5_6_1_2_20

  

6

7

7

7

6

7

7

7

1YTB:A:1

61- 71 158- 240

TATA-BOX BINDING PROTEIN (YTBP)

30. TATA-box binding family (5.Beta-sheet)

61- 155

d.129.1.1

156- 240

d.129.1.1

61- 71 159- 240

DC_5_6_1_2_1

  

6

7

7

7

6

7

7

7

1YTB:A:2

72- 157

TATA-BOX BINDING PROTEIN (YTBP)

30. TATA-box binding family (5.Beta-sheet)

61- 155

d.129.1.1

72- 158

DC_5_6_1_1_1

  

7

10

10

10

9

10

10

9

1AOI:A:1

60- 99

HISTONE H3

24. Histone family (4.Other alfa-helix)

a.22.1.1

38- 135

DC_3_123_1_6_1

  

7

10

10

10

9

10

10

9

1AOI:E:1

60- 99

HISTONE H3

24. Histone family (4.Other alfa-helix)

a.22.1.1

38- 135

DC_3_123_1_6_5

  

7

10

10

10

9

10

10

9

1ID3:E:1

60- 99

HISTONE H3

 

 

7

10

10

10

9

10

10

10

1AOI:C:2

15- 57

HISTONE H2A

24. Histone family (4.Other alfa-helix)

a.22.1.1

4- 118

DC_3_123_1_8_1

  

7

10

10

10

9

10

10

10

1AOI:G:1

12- 59

HISTONE H2A

24. Histone family (4.Other alfa-helix)

a.22.1.1

12- 118

DC_3_123_1_8_2

  

7

10

10

10

9

10

10

10

1F66:C:1

816- 863

HISTONE H2A.Z

a.22.1.1

 

 

7

10

10

10

9

10

10

10

1ID3:C:1

16- 60

HISTONE H2A.1

 

 

7

10

10

10

9

-

-

-

1AOI:B:1

20- 59

HISTONE H4

24. Histone family (4.Other alfa-helix)

a.22.1.1

20- 102

DC_3_123_1_4_1

  

7

10

10

-

-

-

-

-

1BPX:A:1

5- 52

DNA POLYMERASE BETA

47. DNA polymerase-beta family (8.Enzyme)

5- 91

a.60.6.1

10- 90

DC_3_52_3_1_4

  

7

10

10

-

-

-

-

-

1ECR:A:2

182- 226

REPLICATION TERMINATOR PROTEIN

32. Tus replication terminator family (6.Beta-haipin/ribbon)

e.2.1.1

175- 234 289- 309

DC_3_20_1_1_1

  

7

10

10

-

-

-

-

-

1HLV:A:2

70- 118

MAJOR CENTROMERE AUTOANTIGEN B

 

 

8

11

-

11

10

11

11

11

1AU7:A:1

5- 105

PIT-1

2. Homeodomain family (1.HTH)

5- 76

a.35.1.1

5- 76

DC_3_214_1_4_1

  

8

11

-

11

10

11

11

11

1AU7:B:1

5- 104

PIT-1

2. Homeodomain family (1.HTH)

5- 74

a.35.1.1

5- 74

DC_3_214_1_4_2

  

8

-

-

11

10

11

11

11

1CQT:A:1

2- 102

POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1

2- 75

a.35.1.1

5- 74

DC_3_214_1_4_5

  

8

-

-

11

10

11

11

11

1CQT:B:1

505- 602

POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1

505- 575

a.35.1.1

505- 574

DC_3_214_1_4_4

  

8

-

-

11

10

11

11

11

1HF0:A:1

6- 104

OCTAMER-BINDING TRANSCRIPTION FACTOR 1

2. Homeodomain family (1.HTH)

 

 

8

11

24

11

10

26

26

26

3CRO:L:1

1- 64

434 CRO PROTEIN

1. Cro and Repressor family (1.HTH)

a.35.1.2

1- 63

DC_3_214_1_2_10

  

8

11

24

11

10

26

26

26

2OR1:L:1

1- 63

434 REPRESSOR (AMINO-TERMINAL DOMAIN)

1. Cro and Repressor family (1.HTH)

a.35.1.2

1- 63

DC_3_214_1_2_7

  

8

11

-

11

10

26

26

-

1LLI:A:1

4- 82

LAMBDA REPRESSOR MUTANT

1. Cro and Repressor family (1.HTH)

a.35.1.2

6- 76

DC_3_214_1_3_2

  

8

11

-

11

10

-

-

-

1E3O:C:1

1- 75

OCTAMER-BINDING TRANSCRIPTION FACTOR 1

 

 

9

-

-

12

11

12

12

-

1AZ0:A:1

20- 205

ECORV ENDONUCLEASE

41. Endonuclease EcoRV family (8.Enzyme)

c.52.1.2

2- 18 36- 139 165- 205

DC_1_81_1_2_8

19- 35 140- 164

DC_6_215_1_1_8

9

42

39

12

11

12

12

41

1KC6:A:2

15- 56 112- 230

TYPE II RESTRICTION ENZYME HINCII

 

 

9

42

39

12

11

12

12

41

1KC6:B:1

2- 55 113- 242

TYPE II RESTRICTION ENZYME HINCII

 

 

10

12

11

13

12

13

13

12

1AZP:A:1

1- 66

SAC7D

35. Hyperthermophile DNA-BP (6.Beta-haipin/ribbon)

d.9.2.1

1- 66

DC_4_19_2_1_1

  

10

12

11

13

12

13

13

12

1BBX:C:1

1- 53

DNA-BINDING PROTEIN 7

d.9.2.1

2- 61

DC_4_19_2_1_10

  

10

12

11

13

12

13

13

12

1BF4:A:1

2- 64

SSO7D

35. Hyperthermophile DNA-BP (6.Beta-haipin/ribbon)

d.9.2.1

2- 64

DC_4_19_2_1_5

  

10

12

11

13

12

13

13

12

1CA6:A:1

1- 55

CHROMOSOMAL PROTEIN SAC7D

d.9.2.1

1- 66

DC_4_19_2_1_2

  

11

13

12

14

13

14

14

13

1B01:A:1

1- 43

TRANSCRIPTIONAL REPRESSOR COPG

a.43.1.2

1- 43

DC_3_209_1_1_3

  

11

13

12

14

13

14

14

13

1BDT:A:1

13- 52

ARC

36. Arc repressor (6.Beta-haipin/ribbon)

a.43.1.1

5- 52

DC_3_209_1_2_4

  

11

13

12

14

13

14

14

13

1BDV:A:1

7- 52

ARC FV10 REPRESSOR

36. Arc repressor (6.Beta-haipin/ribbon)

a.43.1.1

7- 52

DC_3_209_1_2_27

  

12

14

-

15

14

15

-

-

2BAM:A:1

1- 194

ENDONUCLEASE BAMHI

43. Endonuclease BamHI family (8.Enzyme)

c.52.1.3

1- 36 57- 181

DC_1_11_1_5_9

37- 56 182- 196

DC_7_89_1_1_9

12

14

-

15

14

15

-

-

1D2I:A:1

1- 29 31- 116 118- 123 125- 134 136- 172

RESTRICTION ENDONUCLEASE BGLII

c.52.1.5

1- 31 53- 173

DC_1_11_1_4_1

32- 52 174- 202

DC_7_192_1_1_1

13

15

13

16

15

16

16

15

2BDP:A:2

511- 579

DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

469- 876

e.8.1.1

512- 578

DC_3_41_1_3_3

  

13

15

13

16

15

16

16

15

2KTQ:A:4

464- 537

LARGE FRAGMENT OF DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

423- 832

e.8.1.1

452- 548

DC_3_41_1_1_7

  

13

15

13

16

15

16

16

15

1T7P:A:3

247- 263 333- 394

DNA POLYMERASE

49. DNA polymerase T7 (8.Enzyme)

211- 704

e.8.1.1

236- 265 331- 408

DC_3_41_1_2_1

  

13

15

13

16

15

16

16

15

1TAU:A:6

461- 541

TAQ DNA POLYMERASE

48. DNA polymerase I (8.Enzyme)

423- 832

e.8.1.1

452- 548

DC_3_41_1_1_2

  

14

16

14

17

16

17

17

16

2BDP:A:3

488- 510 580- 640

DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

469- 876

e.8.1.1

493- 511 579- 602

DC_3_8_2_1_3

468- 492 603- 621

DC_3_8_3_2_3

14

16

14

17

16

17

17

16

1D8Y:A:3

533- 559 633- 693

DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

519- 928

e.8.1.1

545- 563 632- 655

DC_3_8_2_1_6

519- 544 656- 674

DC_3_8_3_2_6

14

16

14

17

16

17

17

16

3KTQ:A:3

444- 463 538- 598

LARGE FRAGMENT OF DNA POLYMERASE I

48. DNA polymerase I (8.Enzyme)

423- 831

e.8.1.1

433- 451 549- 602

DC_6_42_3_1_12

  

14

16

-

17

16

17

17

-

1T7P:A:4

219- 246 395- 439

DNA POLYMERASE

49. DNA polymerase T7 (8.Enzyme)

211- 704

e.8.1.1

223- 235 409- 503 608- 704

DC_6_23_19_3_1

  

15

19

17

19

18

19

19

19

2BOP:A:1

326- 410

BOVINE PAPILLOMAVIRUS-1 E2

23. Papillomavirus-1 E2 family (4.Other alfa-helix)

d.58.8.1

326- 410

DC_5_3_15_2_1

  

15

19

17

19

18

19

19

19

1JJ4:A:1

286- 364

REGULATORY PROTEIN E2

 

 

15

19

17

19

18

19

19

19

2UP1:A:1

8- 89

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1

8- 98

d.58.7.1

9- 93

DC_5_3_26_2_3

  

16

20

18

20

19

20

20

20

2BPF:A:2

92- 143

DNA POLYMERASE BETA

47. DNA polymerase-beta family (8.Enzyme)

92- 335

e.9.1.1

91- 148

DC_3_178_1_6_8

  

16

20

18

20

19

20

20

20

1BPZ:A:3

83- 144

DNA POLYMERASE BETA

47. DNA polymerase-beta family (8.Enzyme)

92- 335

e.9.1.1

91- 148

DC_3_178_1_6_5

  

16

20

18

20

19

20

20

20

1JX4:A:2

176- 215 217- 227

DNA POLYMERASE IV (FAMILY Y)

 

 

17

21

19

21

20

21

21

21

1C7U:A:1

20- 61

MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM

d.88.1.1

2- 68

DC_3_15_2_1_10

  

17

21

19

21

20

21

21

21

1K6O:B:1

164- 203

SERUM RESPONSE FACTOR

 

 

18

22

20

22

21

22

22

22

1C9R:A:1

1- 224

HIV-1 REVERSE TRANSCRIPTASE

1- 429

e.8.1.2

90- 101 222- 318

DC_3_219_1_1_36

102- 112 168- 221

DC_5_3_24_1_36

18

22

20

22

21

22

22

22

1D0E:A:1

31- 264

REVERSE TRANSCRIPTASE

e.8.1.2

24- 46 125- 158 194- 274

DC_5_3_24_2_6

47- 124 159- 193

DC_6_61_1_2_6

18

22

20

22

21

22

22

22

2HMI:A:1

1- 224

HIV-1 REVERSE TRANSCRIPTASE

50. HIV reverse transcriptase (8.Enzyme)

1- 429

e.8.1.2

90- 101 222- 318

DC_3_219_1_1_25

102- 112 168- 221

DC_5_3_24_1_25

18

22

20

22

21

22

22

22

1RTD:A:1

1- 223

REVERSE TRANSCRIPTASE

1- 429

e.8.1.2

90- 101 222- 318

DC_3_219_1_1_33

102- 112 168- 221

DC_5_3_24_1_33

19

23

21

23

22

23

23

23

1C9R:A:3

244- 315

HIV-1 REVERSE TRANSCRIPTASE

1- 429

e.8.1.2

90- 101 222- 318

DC_3_219_1_1_36

  

19

23

21

23

22

23

23

23

2HMI:A:3

244- 315

HIV-1 REVERSE TRANSCRIPTASE

50. HIV reverse transcriptase (8.Enzyme)

1- 429

e.8.1.2

90- 101 222- 318

DC_3_219_1_1_25

  

20

24

22

24

23

24

24

24

1CJG:A:1

1- 49

LAC REPRESSOR

a.35.1.5

 

 

20

24

22

24

23

24

24

24

1JFS:A:1

2- 47

PURINE NUCLEOTIDE SYNTHESIS REPRESSOR

3. LacI repressor family (1.HTH)

 

 

20

24

22

24

23

24

24

24

1LBG:A:1

2- 50

LACTOSE OPERON REPRESSOR

1- 60

a.35.1.5

 

 

21

25

23

25

24

25

25

25

1CKT:A:1

7- 77

HIGH MOBILITY GROUP 1 PROTEIN

28. high mobility group family (4.Other alfa-helix)

a.21.1.1

7- 77

DC_6_164_1_1_1

  

21

25

23

25

24

25

25

25

1E7J:A:1

1- 64

HIGH MOBILITY GROUP PROTEIN D (HMG-D)

 

 

21

25

23

25

24

25

25

25

1J46:A:1

1- 74

SEX-DETERMINING REGION Y PROTEIN

 

 

21

25

23

25

24

25

25

25

2LEF:A:1

1- 76

LYMPHOID ENHANCER-BINDING FACTOR

a.21.1.1

1- 86

DC_3_191_1_2_1

  

21

25

23

25

24

25

25

25

1QRV:A:1

2- 74

HIGH MOBILITY GROUP PROTEIN D

28. high mobility group family (4.Other alfa-helix)

a.21.1.1

3- 74

DC_3_191_1_3_3

  

21

25

23

25

24

-

-

-

1HRY:A:1

3- 75

HUMAN SRY

a.21.1.1

3- 75

DC_6_164_1_4_1

  

22

26

25

-

-

-

-

-

6CRO:A:1

2- 61

CRO

1. Cro and Repressor family (1.HTH)

a.35.1.2

3- 58

DC_3_18_1_1_7

  

22

26

25

-

-

-

-

-

3ORC:A:1

2- 66

CRO REPRESSOR

1. Cro and Repressor family (1.HTH)

a.35.1.2

3- 66

DC_3_18_1_1_2

  

23

27

26

26

25

27

27

27

1CRX:A:2

37- 131

CRE RECOMBINASE

27. Cre recombinase family (4.Other alfa-helix)

20- 129

a.60.9.1

64- 129

DC_6_139_2_1_2

  

23

27

26

26

25

27

27

27

2CRX:B:1

19- 131

CRE RECOMBINASE

19- 129

a.60.9.1

64- 129

DC_6_139_2_1_8

  

23

27

26

26

25

27

27

27

1DRG:A:1

21- 131

CRE RECOMBINASE

 

 

24

28

-

-

-

-

-

-

1DE8:B:1

43- 318

MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE

d.151.1.1

62- 318

DC_1_40_2_1_9

  

24

28

-

-

-

-

-

-

2DNJ:A:1

1- 260

DEOXYRIBONUCLEASE I (DNASE I)

45. Dnase I family (8.Enzyme)

d.151.1.1

1- 260

DC_1_40_2_3_3

  

25

29

27

-

-

-

-

-

1DIZ:A:1

1- 282

3-METHYLADENINE DNA GLYCOSYLASE II

100- 282

a.96.1.3

1- 99

d.129.1.2

1- 282

DC_6_160_1_4_3

  

25

29

27

-

-

-

-

-

1EBM:A:1

9- 325

8-OXOGUANINE DNA GLYCOSYLASE

136- 325

a.96.1.3

9- 135

d.129.1.2

9- 325

DC_6_160_1_3_1

  

26

30

28

27

26

28

28

28

1E3M:A:2

16- 32 34- 67 69- 115

DNA MISMATCH REPAIR PROTEIN MUTS

2- 116

d.75.2.1

 

 

26

30

28

27

26

28

28

28

1EWQ:A:1

1- 69 71- 87 89- 117

DNA MISMATCH REPAIR PROTEIN MUTS

1- 120

d.75.2.1

 

 

27

31

29

28

27

29

29

29

1E3M:A:4

441- 489 491- 512

DNA MISMATCH REPAIR PROTEIN MUTS

270- 566

a.113.1.1

 

 

27

31

29

28

27

29

29

29

1EWQ:A:4

419- 480 482- 486

DNA MISMATCH REPAIR PROTEIN MUTS

267- 541

a.113.1.1

 

 

27

31

29

28

27

29

29

29

1EWQ:B:4

1412- 1480 1482- 1493

DNA MISMATCH REPAIR PROTEIN MUTS

1267- 1541

a.113.1.1

 

 

28

32

-

29

28

30

30

30

1EXI:A:1

3- 95

MULTIDRUG-EFFLUX TRANSPORTER REGULATOR

3- 120

a.6.1.3

 

 

28

32

-

29

28

30

30

30

1EXJ:A:1

3- 74

MULTIDRUG-EFFLUX TRANSPORTER REGULATOR

3- 120

a.6.1.3

 

 

29

37

34

34

34

36

35

35

1GM5:A:4

155- 250

RECG

 

 

29

37

34

34

34

36

35

35

1JB7:A:3

211- 298

TELOMERE-BINDING PROTEIN ALPHA SUBUNIT

 

 

29

37

34

34

34

36

35

35

1JMC:A:2

299- 403

REPLICATION PROTEIN A

299- 420

b.40.4.3

297- 403

DC_4_10_1_7_1

  

29

37

34

34

34

-

-

-

1JMC:A:1

183- 298

REPLICATION PROTEIN A

183- 298

b.40.4.3

183- 296

DC_4_10_5_1_1

  

29

37

34

-

-

-

-

-

1JB7:A:1

36- 146

TELOMERE-BINDING PROTEIN ALPHA SUBUNIT

 

 

29

37

-

-

-

-

-

-

1K8G:A:1

36- 180

TELOMERE-BINDING PROTEIN ALPHA SUBUNIT

 

 

29

-

-

-

-

-

-

-

1EYG:A:1

1001- 1112

SINGLE-STRAND DNA-BINDING PROTEIN

b.40.4.3

1002- 1112

DC_4_10_1_6_5

  

29

-

-

-

-

-

-

-

1K8G:B:2

197- 316

TELOMERE-BINDING PROTEIN ALPHA SUBUNIT

 

 

30

33

30

30

29

31

31

31

1EYU:B:2

14- 66

TYPE II RESTRICTION ENZYME PVUII

c.52.1.6

2- 157

DC_1_81_1_3_8

  

30

33

30

30

29

31

31

31

1PVI:A:2

13- 66

PVUII ENDONUCLEASE

40. Endonuclease PvuII family (8.Enzyme)

c.52.1.6

2- 157

DC_1_81_1_3_4

  

31

34

31

31

31

33

32

32

1FIU:A:1

66- 286

TYPE II RESTRICTION ENZYME NGOMI

c.52.1.10

 

 

31

34

31

31

31

33

32

32

1FIU:B:1

12- 286

TYPE II RESTRICTION ENZYME NGOMI

c.52.1.10

 

 

32

35

-

32

32

34

33

33

1FLO:A:1

152- 360

FLP RECOMBINASE

135- 423

d.163.1.1

 

 

32

35

-

32

32

34

33

33

1FLO:C:1

154- 311

FLP RECOMBINASE

137- 423

d.163.1.1

 

 

33

36

32

33

33

35

34

34

1GAT:A:1

1- 60

ERYTHROID TRANSCRIPTION FACTOR GATA-1

g.39.1.1

1- 60

DC_6_172_1_1_1

  

33

36

32

33

33

35

34

34

2GAT:A:1

1- 53

GATA-1

g.39.1.1

1- 60

DC_6_172_1_1_4

  

33

36

32

33

33

35

34

34

4GAT:A:1

1- 56

AREA

g.39.1.1

8- 64

DC_6_172_1_1_7

  

33

36

32

33

33

35

34

34

5GAT:A:1

1- 56

AREA

g.39.1.1

8- 64

DC_6_172_1_1_8

  

33

36

32

33

33

35

34

34

6GAT:A:1

1- 56

AREA

g.39.1.1

8- 65

DC_6_172_1_1_5

  

34

38

35

35

35

37

36

36

2HAP:C:1

55- 103

HEME ACTIVATOR PROTEIN

55- 97

g.38.1.1

59- 128

DC_6_193_1_4_5

  

34

38

35

35

35

37

36

36

2HAP:D:1

56- 98

HEME ACTIVATOR PROTEIN

56- 97

g.38.1.1

62- 130

DC_6_193_1_4_10

  

34

38

35

35

40

42

41

43

1PYI:A:1

30- 80

PYRIMIDINE PATHWAY REGULATOR 1 (PPR1)

30- 71

g.38.1.1

30- 117

DC_7_221_1_1_1

  

34

38

35

35

40

42

41

43

1PYI:B:1

30- 75

PYRIMIDINE PATHWAY REGULATOR 1 (PPR1)

30- 71

g.38.1.1

30- 99

DC_7_221_1_1_2

  

35

39

36

36

36

39

37

38

1IHF:A:1

33- 87

INTEGRATION HOST FACTOR

33. Integration host factor family (6.Beta-haipin/ribbon)

a.55.1.1

3- 92

DC_6_170_3_1_7

  

35

39

36

36

36

39

37

38

1IHF:B:1

33- 83

INTEGRATION HOST FACTOR

33. Integration host factor family (6.Beta-haipin/ribbon)

a.55.1.1

1- 91

DC_6_170_3_1_6

  

36

40

37

37

37

-

-

-

1JEY:A:3

253- 444

KU70

 

 

36

40

37

37

37

-

-

-

1JEY:B:2

244- 431

KU80

 

 

37

43

40

39

39

41

40

42

2PJR:A:1

7- 100 195- 283

HELICASE PCRA

7- 318

c.37.1.13

23- 113 196- 250 261- 282

DC_1_15_1_13_3

251- 260 283- 318

DC_3_98_1_1_3

37

43

40

39

39

41

40

42

1UAA:A:2

14- 92 186- 274

ATP-DEPENDENT DNA HELICASE REP

2- 307

c.37.1.13

14- 105 187- 241 252- 273

DC_1_15_1_13_6

242- 251 274- 309 575- 602

DC_3_98_1_1_6

38

-

-

40

-

-

-

-

3PJR:A:3

284- 382 543- 652

HELICASE PCRA

4- 318

c.37.1.13

319- 652

c.37.1.13

319- 381 556- 581 611- 651

DC_1_17_1_3_2

251- 260 283- 318 582- 610

DC_3_98_1_1_2

38

44

41

40

42

44

43

45

1UAA:A:3

310- 377 539- 630

ATP-DEPENDENT DNA HELICASE REP

308- 640

c.37.1.13

310- 373 549- 574 603- 640

DC_1_17_1_3_6

242- 251 274- 309 575- 602

DC_3_98_1_1_6

38

44

41

40

42

44

43

45

1UAA:B:3

310- 378 538- 613

ATP-DEPENDENT DNA HELICASE REP

308- 642

c.37.1.13

310- 373 549- 574 603- 642

DC_1_17_1_3_5

242- 251 274- 309 575- 602

DC_3_98_1_1_5

  1. Alexandrov NN, Shindyalov IN, Bioinformatics, 2002, submitted

  2. Murzin AG, Brenner SE, Hubbard T, Chothia C. J Mol Biol 1995,247:536-540.

  3. Lo Conte L, Ailey B, Hubbard TJP, Brenner SE, Murzin AG, Chothia C. Nucl Acids Res 2000,28:257-259.

  4. Dietmann S, Holm L. Nat Struct Biol 2001,8:953-957.

  5. Dietmann S, Park J, Notredame C, Heger A, Lappe M, Holm L. Nucl Acids Res 2001,29:55-57.

  6. Luscombe NM, Austin SE, Berman HM, Thornton JM. Genome Biology 2000,1:1-37.